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Changing the git plugin from 1.1.6 to 2.2.1 also changed from relying on per client credential configuration to using the Jenkins credentials plugin for credential management. I don't know why the git fetch command thinks it needs to create (or lock) the %HOME%\.ssh directory, but that is the challenge you're trying to resolve.
You could check if the JGit implementation inside the git client plugin is better at handling this case. You enable JGit from the "Manage Jenkins" page, where you add a git implementation named "jgit" from the pick list.