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If you're not adding the "Additional Behaviours" to "Force polling using workspace", then the polling is performed from the master node and may be using the environment of the master node.
Since you indicated that the master node also sets LD_LIBRARY_PATH, can you confirm that a job which executes a git command as one of its build steps runs as expected on your master node?
Can you provide more detailed instructions so that others can duplicate your case? I don't modify LD_LIBRARY_PATH in my Red Hat, SuSE, Debian, or Ubuntu environments and I use git on all those machines.