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Agreed that ssh-key based authentication for jenkins-cli is broken somewhere between LTS versions 1.554.2 and 1.565.2
See the small test below:
[42] root @ xxxxx /home/jenkins > ls |grep jenkins-cli
jenkins-cli.jar_1.532.2
jenkins-cli.jar_1.554.2
jenkins-cli.jar_1.565.2
[43] root @ xxxxxx /home/jenkins > sudo -u jenkins java -jar jenkins-cli.jar_1.532.2 -s http://xxxx.xxxx.xxxx:8080 -i /var/lib/jenkins/.ssh/id_rsa.pub version
1.565.2
[44] root @ xxxxxx /home/jenkins > sudo -u jenkins java -jar jenkins-cli.jar_1.554.2 -s http://xxx.xxx.xxxx:8080 -i /var/lib/jenkins/.ssh/id_rsa.pub version
1.565.2
[45] root @ XXXXXXX /home/jenkins > sudo -u jenkins java -jar jenkins-cli.jar_1.565.2 -s http://xxx.xxx.xxxx:8080 -i /var/lib/jenkins/.ssh/id_rsa.pub version
Exception in thread "main" java.io.IOException: Invalid PEM structure, '-----BEGIN...' missing
at com.trilead.ssh2.crypto.PEMDecoder.parsePEM(PEMDecoder.java:138)
at com.trilead.ssh2.crypto.PEMDecoder.decode(PEMDecoder.java:313)
at hudson.cli.PrivateKeyProvider.loadKey(PrivateKeyProvider.java:143)
at hudson.cli.PrivateKeyProvider.loadKey(PrivateKeyProvider.java:126)
at hudson.cli.PrivateKeyProvider.readFrom(PrivateKeyProvider.java:107)
at hudson.cli.CLI._main(CLI.java:428)
at hudson.cli.CLI.main(CLI.java:382)
[46] root @ XXXXXXXX /home/jenkins >