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Huge DISCLAIMER: I am not a Java Developer
Mark Waite. Maybe there is a dependency missing for the git plugin. Which? I have no idea. Could you check if the MatrixBuild.class is in your war?
It seems that Jesse Glick removed completely that library. Check merge of tree extract-matrix-project 6883b915239b7a8e46b5376f65353c85d3e482c7
All the missing references to MatrixBuild seems to be in test code, so there is a chance that this is not detected on build time.