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You found https://github.com/jenkinsci/jenkins/pull/1397
which includes the line (second commit): only set umask if set in /etc/default/jenkins
referencing https://github.com/jenkinsci/jenkins/blob/master/debian/debian/jenkins.default#L45
So it seemed obvious you knew about this option.
It's also noted in the change log at http://jenkins-ci.org/changelog#v1.579
Does the presence of this option resolve this issue for you?