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Jammes Lee It is the SonarQube C# plugin, and not Jenkins, which determined that the FxCop execution was not successful.
To convince you, here is the code: https://github.com/SonarCommunity/sonar-fxcop-library/blob/master/src/main/java/org/sonar/plugins/fxcop/FxCopExecutor.java#L63
FxCopCmd.exe returned 1 as exit code, which is considered as a failure.
Please switch to the SonarQube user mailing list for further support on this subject, as this not related to Jenkins.