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I'd try to make sure to unset the http_proxy and related environment variables before starting the Jenkins process (or rather Tomcat in your case?), instead (if necessary) using proxy configuration in Jenkins (Manage Jenkins » Manage Plugins » Advanced). This may result in child processes (e.g. shell scripts and the tools they run) not inheriting the proxy configuration by default though.
The bug may well be in the gconf (Gnome) library or the JDK, as that's where the crash occurs.
http://hg.openjdk.java.net/jdk7u/jdk7u/jdk/file/54acd5cd0485/src/solaris/native/sun/net/spi/DefaultProxySelector.c#l155
Please also note that the user and password to the proxy are included in plain text in the support bundle (nodes/master/environment.txt), so you should change those now.