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Hmm, will see if I can reproduce in a test. WorkflowRun.checkouts is not transient and is only ever set to a non-null value when the build begins, but I am guessing onLoad fails to set it, implying that this should actually be a RunAction2 or something. 81a052f dealt with a variant NPE.
Independently, GitStatus.doNotifyCommit ought to catch RuntimeException in a listener, warn, and continue.