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What bothers me is that the behaviour of the job is changed unexpectedly. When I configure a job to use a specific JVM, I expect that it will always use that JVM. This is especially important for test jobs. Logging it would already be a big improvement.
BTW, I do think the fact that JAVA_HOME is set empty is an actual bug. If Jenkins falls back to the system JDK, JAVA_HOME should be set accordingly.