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Just tried with LTS 1.596.1 and Findbugs 4.60 and Analysis Core 1.71: works quite well.
Can you please try with these components (and no other plugins installed?). If not please create a new issue with details about your setup and environment.
Or you can check by downloading the acceptance test harness and running the following command: BROWSER=chrome mvn -Dtest=FindBugsPluginTest#should_find_warnings_in_freestyle_job