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The git plugin definitely supports a non-standard port as part of the ssh protocol specification. I regularly test that ssh://mwaite@wheezy64b:45022/var/lib/git/mwaite/bin.git (an ssh protected private repo on my machine named "wheezy64b") can be retrieved with the git client plugin automated tests.
If the ssh agent allows you to fetch, then it may be that you have an ssh passphrase configured on that ssh key. I believe that if a passphrase is configured on the ssh key, then the only way to make the git client use that passphrase is through the ssh agent.
You might also try the "Advanced" button in the credentials plugin to see if it will allow you to enter the passphrase, but my recollection is that didn't allow the plugin to use the passphrase.