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Seems not to be fixed. When renaming a job, we get this in the logs and all future SCM syncs fail. This is using the latest v0.0.8:
Apr 27, 2015 1:13:20 PM FINE hudson.plugins.scm_sync_configuration.SCMManipulator
Deleting SCM hierarchy [/root/jenkins/scm-sync-configuration/checkoutConfiguration/jobs/Frontend_Test] from SCM ...
Apr 27, 2015 1:13:20 PM SEVERE hudson.plugins.scm_sync_configuration.SCMManipulator deleteHierarchy
[deleteHierarchy] Problem during remove : The git command failed.