I'm facing the same problem, but I do not want to upgrade to 2.0. Would 
appreciate other suggestions.

On Saturday, April 30, 2016 at 10:58:08 AM UTC+10, Lionel Orellana wrote:
>
>
> Upgrading from 1.656 to 2.0 fixed it.
>
> The GitHub Branch Source Plugin is probably what made the difference. I 
> was using a Git (as opposed to GitHub) branch source before.
>
> On Friday, 29 April 2016 15:51:58 UTC+10, Lionel Orellana wrote:
>>
>> Hi
>>
>> I have a proxy configured in my Jenkins settings (Manage Plugins -> 
>> Advanced). 
>>
>> I'm pretty sure this is what makes freestyle jobs and Pipelines set the 
>> proxy before connecting to github. 
>>
>> Here's the output from a Pipeline job:
>>
>>  > /opt/rh/devtoolset-2/root/usr/bin/git config --local credential.helper 
>> store --file=/tmp/git7252640829815953814.credentials # timeout=10*Setting 
>> http proxy: serverproxy:8080*
>>
>>  > /opt/rh/devtoolset-2/root/usr/bin/git -c core.askpass=true fetch --tags 
>> --progress https://github.com/****/*****.git 
>> <https://github.com/afsadev/debt-agreement.git> 
>> +refs/heads/*:refs/remotes/origin/*
>>
>>
>> But when I try to run the indexing job in a Multibranch pipeline it fails 
>> to connect to github. It seems to me it is not setting the proxy.
>>
>> FATAL: Failed to recompute children of Debt Agreement Service Pipeline
>>
>> hudson.plugins.git.GitException 
>> <http://stacktrace.jenkins-ci.org/search?query=hudson.plugins.git.GitException>:
>>  org.eclipse.jgit.api.errors.TransportException: 
>> https://github.com/*****/*****.git 
>> <https://github.com/afsadev/debt-agreement.git>: cannot open git-upload-pack
>>      at 
>> org.jenkinsci.plugins.gitclient.JGitAPIImpl.fetch(JGitAPIImpl.java:680) 
>> <http://stacktrace.jenkins-ci.org/search/?query=org.jenkinsci.plugins.gitclient.JGitAPIImpl.fetch&entity=method>
>>      at 
>> jenkins.plugins.git.AbstractGitSCMSource.retrieve(AbstractGitSCMSource.java:174)
>>  
>> <http://stacktrace.jenkins-ci.org/search/?query=jenkins.plugins.git.AbstractGitSCMSource.retrieve&entity=method>
>>      at jenkins.scm.api.SCMSource.fetch(SCMSource.java:146) 
>> <http://stacktrace.jenkins-ci.org/search/?query=jenkins.scm.api.SCMSource.fetch&entity=method>
>>      at 
>> jenkins.branch.MultiBranchProject.computeChildren(MultiBranchProject.java:296)
>>  
>> <http://stacktrace.jenkins-ci.org/search/?query=jenkins.branch.MultiBranchProject.computeChildren&entity=method>
>>      at 
>> com.cloudbees.hudson.plugins.folder.computed.ComputedFolder.updateChildren(ComputedFolder.java:151)
>>  
>> <http://stacktrace.jenkins-ci.org/search/?query=com.cloudbees.hudson.plugins.folder.computed.ComputedFolder.updateChildren&entity=method>
>>      at 
>> com.cloudbees.hudson.plugins.folder.computed.FolderComputation.run(FolderComputation.java:122)
>>  
>> <http://stacktrace.jenkins-ci.org/search/?query=com.cloudbees.hudson.plugins.folder.computed.FolderComputation.run&entity=method>
>>      at hudson.model.ResourceController.execute(ResourceController.java:98) 
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.model.ResourceController.execute&entity=method>
>>      at hudson.model.Executor.run(Executor.java:410) 
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.model.Executor.run&entity=method>
>> Caused by: org.eclipse.jgit.api.errors.TransportException 
>> <http://stacktrace.jenkins-ci.org/search?query=org.eclipse.jgit.api.errors.TransportException>:
>>  https://github.com/******/*******.git 
>> <https://github.com/afsadev/debt-agreement.git>: cannot open git-upload-pack
>>      at org.eclipse.jgit.api.FetchCommand.call(FetchCommand.java:139) 
>> <http://stacktrace.jenkins-ci.org/search/?query=org.eclipse.jgit.api.FetchCommand.call&entity=method>
>>      at 
>> org.jenkinsci.plugins.gitclient.JGitAPIImpl.fetch(JGitAPIImpl.java:678) 
>> <http://stacktrace.jenkins-ci.org/search/?query=org.jenkinsci.plugins.gitclient.JGitAPIImpl.fetch&entity=method>
>>      ... 7 more
>> Caused by: org.eclipse.jgit.errors.TransportException 
>> <http://stacktrace.jenkins-ci.org/search?query=org.eclipse.jgit.errors.TransportException>:
>>  https://github.com/*****/******.git 
>> <https://github.com/afsadev/debt-agreement.git>: cannot open git-upload-pack
>>      at 
>> org.eclipse.jgit.transport.TransportHttp.connect(TransportHttp.java:524) 
>> <http://stacktrace.jenkins-ci.org/search/?query=org.eclipse.jgit.transport.TransportHttp.connect&entity=method>
>>      at 
>> org.eclipse.jgit.transport.TransportHttp.openFetch(TransportHttp.java:309) 
>> <http://stacktrace.jenkins-ci.org/search/?query=org.eclipse.jgit.transport.TransportHttp.openFetch&entity=method>
>>      at 
>> org.eclipse.jgit.transport.FetchProcess.executeImp(FetchProcess.java:136) 
>> <http://stacktrace.jenkins-ci.org/search/?query=org.eclipse.jgit.transport.FetchProcess.executeImp&entity=method>
>>      at 
>> org.eclipse.jgit.transport.FetchProcess.execute(FetchProcess.java:122) 
>> <http://stacktrace.jenkins-ci.org/search/?query=org.eclipse.jgit.transport.FetchProcess.execute&entity=method>
>>      at org.eclipse.jgit.transport.Transport.fetch(Transport.java:1138) 
>> <http://stacktrace.jenkins-ci.org/search/?query=org.eclipse.jgit.transport.Transport.fetch&entity=method>
>>      at org.eclipse.jgit.api.FetchCommand.call(FetchCommand.java:130) 
>> <http://stacktrace.jenkins-ci.org/search/?query=org.eclipse.jgit.api.FetchCommand.call&entity=method>
>>      ... 8 more*Caused by: java.net.ConnectException 
>> <http://stacktrace.jenkins-ci.org/search?query=java.net.ConnectException>: 
>> Connection timed out github.com <http://github.com>
>> *    at org.eclipse.jgit.util.HttpSupport.response(HttpSupport.java:175) 
>> <http://stacktrace.jenkins-ci.org/search/?query=org.eclipse.jgit.util.HttpSupport.response&entity=method>
>>      at 
>> org.eclipse.jgit.transport.TransportHttp.connect(TransportHttp.java:475) 
>> <http://stacktrace.jenkins-ci.org/search/?query=org.eclipse.jgit.transport.TransportHttp.connect&entity=method>
>>      ... 13 more
>> Finished: FAILURE
>>
>>
>> Is there a way to set the proxy or could it be something different?
>>
>>
>> Thanks
>>
>>
>>

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