I will try that, but I believe this is more of a consequence of the issue 
I'm having rather than the cause.

I'll monitor more closely what's happening and keep a longer build history 
to see if a pattern shows up.
Any suggestion on what I should try or do to investigate this further?

Regards,

Jérémie

Le mercredi 29 juin 2016 21:11:53 UTC-4, Mark Waite a écrit :
>
>
>
> On Wed, Jun 29, 2016 at 3:43 PM Jérémie Faucher-Goulet <[email protected] 
> <javascript:>> wrote:
>
>> In that case, yes you are correct, scm-manager does use JGit. I assume 
>> that the "Remote: " part of the messages means these messages come from the 
>> server? I'm not familiar with Git protocols.
>>
>> Yes, we see these failures intermittently on Jenkins. However, I should 
>> perhaps have been more specific about the failure rate. I would guesstimate 
>> that 25% of the builds will fail with a failure to fetch from the server. 
>> With a team of 10-15 developers never getting this issue over the span of 
>> almost a year, I'd say it should have been reproduced/seen by then if it 
>> wasn't specific to Jenkins or the machine it's running on. And developers 
>> uses multiple tools on the client side such as SourceTree, GitKraken, 
>> Egit (Eclipse), and Git (command-line).
>>
>> I'm still very much confused by the fact that Jenkins will show a line in 
>> the logs that it will update/fetch a git submodule when the error occurs. 
>> On successful builds, the submodules aren't touched. Could it be that 
>> Jenkinds calls git from within the wrong 'current directory'?
>>
>
> I believe there is some submodule processing by default in the git 
> plugin.  At least, there is a checkbox "Disable submodule processing" in 
> the advanced submodule processing section of "Additional Behaviours".  You 
> could try that.
>
> Mark Waite
>  
>
>> Other thing I've noticed:
>>
>> Sometimes we will get the error below from git being called manually by 
>> scripts during the build process. Even though it's supposed to be "fatal", 
>> the operations itself looks successful. This was only seen on Windows 
>> however and could relate to a different issue 
>> <https://github.com/git-for-windows/git/issues/766>.
>>
>>> This application has requested the Runtime to terminate it in an unusual 
>>> way.
>>> Please contact the application's support team for more information.
>>> Assertion failed!
>>>
>>> Program: C:\Program 
>>> Files\Git\mingw64\libexec\git-core\git-credential-store.exe
>>> File: exec_cmd.c, Line 23
>>>
>>>
>> Jérémie
>>
>>
>> Le mercredi 29 juin 2016 15:02:32 UTC-4, Mark Waite a écrit :
>>>
>>>
>>>
>>> On Tuesday, June 28, 2016 at 5:53:54 PM UTC-6, Jérémie Faucher-Goulet 
>>> wrote:
>>>>
>>>> Hi Mark,
>>>>
>>>> Thanks for taking time answering,
>>>>
>>>> What do you mean by "git server" and "git as a server"?
>>>>
>>>
>>> I meant scm-manager in your case.  As far as I can tell from reading the 
>>> scm-manager changelog, they use JGit as their internal git implementation.  
>>> I suspect that means they don't use command line git on the server side.
>>>  
>>>
>>>> We currently use (and clone via HTTPS) from a private installation of 
>>>> scm-manager <https://www.scm-manager.org/> version 1.41. But I don't 
>>>> think the "git server" is at cause since only Jenkins experiences these 
>>>> issues.
>>>> Jenkins is currently configured to use Git via command line. The 
>>>> windows machine is running Git 2.8.3. The Linux slave machine is running 
>>>> Git 1.9.1.
>>>>
>>>>
>>> I thought you said that Jenkins only saw those failures intermittently.  
>>> If only intermittently, then Jenkins more frequent use of checkouts may 
>>> mean it is more likely to be seen there than by users doing checkout.
>>>  
>>>
>>>> Is the repo big? Not that big, unless you are counting the submodules. 
>>>> My understanding however is that submodules should not be initialized 
>>>> unless we've specified an advanced behaviour in the job.
>>>> Beside, this is not a clone operation here that fails. The repository 
>>>> already is in the job's workspace from a previous successful build. This 
>>>> is 
>>>> a git fetch.
>>>>
>>>> It is my belief the "Finding sources" and "Getting sizes" messages 
>>>> comes from the fact that the "--progress" option was passed to git 
>>>> fetch when Jenkins was doing it's thing. I could be competently wrong too 
>>>> however ;-)
>>>>
>>>> FYI. the following 'Additional Behaviours' are used in the job:
>>>>
>>>>    - Clean before checkout
>>>>    - Check out to a sub-directory
>>>>    - Custom SCM name
>>>>
>>>> Best regards,
>>>>
>>>> Jérémie
>>>>
>>>> Le mardi 28 juin 2016 16:24:40 UTC-4, Mark Waite a écrit :
>>>>>
>>>>> Are you trying to clone a huge repo with JGit on the git server?  If 
>>>>> so, you might try cloning the same repo with command line git on the 
>>>>> server.
>>>>>
>>>>> I don't recognize "Finding sources" or "Getting sizes" as common 
>>>>> messages from command line git as a server.
>>>>>
>>>>> Mark Waite
>>>>>
>>>>> On Thursday, June 16, 2016 at 10:57:59 AM UTC-6, Jérémie 
>>>>> Faucher-Goulet wrote:
>>>>>>
>>>>>> Hello all,
>>>>>> I've got a nagging problem for which I'd welcome some thoughtful 
>>>>>> expert input...
>>>>>>
>>>>>> Once in a while, our builds will fail with the output pasted below in 
>>>>>> the console. This is a build triggered by another job, which itself is 
>>>>>> triggered remotely by Atlassian Fisheye when a commit is pushed to the 
>>>>>> repository. This is part of our CI system.
>>>>>>
>>>>>> Building remotely on grs-jslave 
>>>>>> <http://grs-jenkins03.trilliant.local/computer/grs-jslave> (linux 
>>>>>> openwrt cmockery2) in workspace 
>>>>>> /var/grs-jenkins03/workspace/smv6-6lr-core_Develop_Linux
>>>>>>  > git rev-parse --is-inside-work-tree # timeout=10
>>>>>> Fetching changes from the remote Git repository
>>>>>>  > git config remote.origin.url 
>>>>>> https://grs-softsvnrepo1.trilliant.local:8081/scm/git/smv6-6lr-core # 
>>>>>> timeout=10
>>>>>> Cleaning workspace
>>>>>>  > git rev-parse --verify HEAD # timeout=10
>>>>>> Resetting working tree
>>>>>>  > git reset --hard # timeout=10
>>>>>>  > git clean -fdx # timeout=10
>>>>>> Fetching upstream changes from 
>>>>>> https://grs-softsvnrepo1.trilliant.local:8081/scm/git/smv6-6lr-core
>>>>>>  > git --version # timeout=10
>>>>>> using .gitcredentials to set credentials
>>>>>>  > git config --local credential.username grfbuild # timeout=10
>>>>>>  > git config --local credential.helper store 
>>>>>> --file=/tmp/git9025647881849389319.credentials # timeout=10
>>>>>>  > git -c core.askpass=true fetch --tags --progress 
>>>>>> https://grs-softsvnrepo1.trilliant.local:8081/scm/git/smv6-6lr-core 
>>>>>> +refs/heads/*:refs/remotes/origin/*
>>>>>>  > git config --local --remove-section credential # timeout=10
>>>>>> ERROR: Error fetching remote repo 'origin'
>>>>>> hudson.plugins.git.GitException 
>>>>>> <http://stacktrace.jenkins-ci.org/search?query=hudson.plugins.git.GitException>:
>>>>>>  Failed to fetch from 
>>>>>> https://grs-softsvnrepo1.trilliant.local:8081/scm/git/smv6-6lr-core
>>>>>>         at hudson.plugins.git.GitSCM.fetchFrom(GitSCM.java:766) 
>>>>>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.plugins.git.GitSCM.fetchFrom&entity=method>
>>>>>>         at hudson.plugins.git.GitSCM.retrieveChanges(GitSCM.java:1022) 
>>>>>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.plugins.git.GitSCM.retrieveChanges&entity=method>
>>>>>>         at hudson.plugins.git.GitSCM.checkout(GitSCM.java:1053) 
>>>>>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.plugins.git.GitSCM.checkout&entity=method>
>>>>>>         at hudson.scm.SCM.checkout(SCM.java:485) 
>>>>>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.scm.SCM.checkout&entity=method>
>>>>>>         at 
>>>>>> hudson.model.AbstractProject.checkout(AbstractProject.java:1275) 
>>>>>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.model.AbstractProject.checkout&entity=method>
>>>>>>         at 
>>>>>> hudson.model.AbstractBuild$AbstractBuildExecution.defaultCheckout(AbstractBuild.java:610)
>>>>>>  
>>>>>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.model.AbstractBuild$AbstractBuildExecution.defaultCheckout&entity=method>
>>>>>>         at 
>>>>>> jenkins.scm.SCMCheckoutStrategy.checkout(SCMCheckoutStrategy.java:86) 
>>>>>> <http://stacktrace.jenkins-ci.org/search/?query=jenkins.scm.SCMCheckoutStrategy.checkout&entity=method>
>>>>>>         at 
>>>>>> hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:532)
>>>>>>  
>>>>>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.model.AbstractBuild$AbstractBuildExecution.run&entity=method>
>>>>>>         at hudson.model.Run.execute(Run.java:1741) 
>>>>>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.model.Run.execute&entity=method>
>>>>>>         at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43) 
>>>>>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.model.FreeStyleBuild.run&entity=method>
>>>>>>         at 
>>>>>> hudson.model.ResourceController.execute(ResourceController.java:98) 
>>>>>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.model.ResourceController.execute&entity=method>
>>>>>>         at hudson.model.Executor.run(Executor.java:408) 
>>>>>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.model.Executor.run&entity=method>
>>>>>> Caused by: hudson.plugins.git.GitException 
>>>>>> <http://stacktrace.jenkins-ci.org/search?query=hudson.plugins.git.GitException>:
>>>>>>  Command "git -c core.askpass=true fetch --tags --progress 
>>>>>> https://grs-softsvnrepo1.trilliant.local:8081/scm/git/smv6-6lr-core 
>>>>>> +refs/heads/*:refs/remotes/origin/*" returned status code 1:
>>>>>> stdout: Fetching submodule contrib/exegin-nan
>>>>>>
>>>>>> stderr: remote: Counting objects: 1           
>>>>>> remote: Counting objects: 57, done        
>>>>>> remote: Finding sources:   4% (1/25)           
>>>>>> remote: Finding sources:   8% (2/25)           
>>>>>> remote: Finding sources:  12% (3/25)           
>>>>>> remote: Finding sources:  16% (4/25)           
>>>>>> remote: Finding sources:  20% (5/25)           
>>>>>> remote: Finding sources:  24% (6/25)           
>>>>>> remote: Finding sources:  28% (7/25)           
>>>>>> remote: Finding sources:  32% (8/25)           
>>>>>> remote: Finding sources:  36% (9/25)           
>>>>>> remote: Finding sources:  40% (10/25)           
>>>>>> remote: Finding sources:  44% (11/25)           
>>>>>> remote: Finding sources:  48% (12/25)           
>>>>>> remote: Finding sources:  52% (13/25)           
>>>>>> remote: Finding sources:  56% (14/25)           
>>>>>> remote: Finding sources:  60% (15/25)           
>>>>>> remote: Finding sources:  64% (16/25)           
>>>>>> remote: Finding sources:  68% (17/25)           
>>>>>> remote: Finding sources:  72% (18/25)           
>>>>>> remote: Finding sources:  76% (19/25)           
>>>>>> remote: Finding sources:  80% (20/25)           
>>>>>> remote: Finding sources:  84% (21/25)           
>>>>>> remote: Finding sources:  88% (22/25)           
>>>>>> remote: Finding sources:  92% (23/25)           
>>>>>> remote: Finding sources:  96% (24/25)           
>>>>>> remote: Finding sources: 100% (25/25)           
>>>>>> remote: Finding sources: 100% (25/25)        
>>>>>> remote: Getting sizes:   2% (1/42)           
>>>>>> remote: Getting sizes:   4% (2/42)           
>>>>>> remote: Getting sizes:   7% (3/42)           
>>>>>> remote: Getting sizes:   9% (4/42)           
>>>>>> remote: Getting sizes:  11% (5/42)           
>>>>>> remote: Getting sizes:  14% (6/42)           
>>>>>> remote: Getting sizes:  16% (7/42)           
>>>>>> remote: Getting sizes:  19% (8/42)           
>>>>>> remote: Getting sizes:  21% (9/42)           
>>>>>> remote: Getting sizes:  23% (10/42)           
>>>>>> remote: Getting sizes:  26% (11/42)           
>>>>>> remote: Getting sizes:  28% (12/42)           
>>>>>> remote: Getting sizes:  30% (13/42)           
>>>>>> remote: Getting sizes:  33% (14/42)           
>>>>>> remote: Getting sizes:  35% (15/42)           
>>>>>> remote: Getting sizes:  38% (16/42)           
>>>>>> remote: Getting sizes:  40% (17/42)           
>>>>>> remote: Getting sizes:  42% (18/42)           
>>>>>> remote: Getting sizes:  45% (19/42)           
>>>>>> remote: Getting sizes:  47% (20/42)           
>>>>>> remote: Getting sizes:  50% (21/42)           
>>>>>> remote: Getting sizes:  52% (22/42)           
>>>>>> remote: Getting sizes:  54% (23/42)           
>>>>>> remote: Getting sizes:  57% (24/42)           
>>>>>> remote: Getting sizes:  59% (25/42)           
>>>>>> remote: Getting sizes:  61% (26/42)           
>>>>>> remote: Getting sizes:  64% (27/42)           
>>>>>> remote: Getting sizes:  66% (28/42)           
>>>>>> remote: Getting sizes:  69% (29/42)           
>>>>>> remote: Getting sizes:  71% (30/42)           
>>>>>> remote: Getting sizes:  73% (31/42)           
>>>>>> remote: Getting sizes:  76% (32/42)           
>>>>>> remote: Getting sizes:  78% (33/42)           
>>>>>> remote: Getting sizes:  80% (34/42)           
>>>>>> remote: Getting sizes:  83% (35/42)           
>>>>>> remote: Getting sizes:  85% (36/42)           
>>>>>> remote: Getting sizes:  88% (37/42)           
>>>>>> remote: Getting sizes:  90% (38/42)           
>>>>>> remote: Getting sizes:  92% (39/42)           
>>>>>> remote: Getting sizes:  95% (40/42)           
>>>>>> remote: Getting sizes:  97% (41/42)           
>>>>>> remote: Getting sizes: 100% (42/42)           
>>>>>> remote: Getting sizes: 100% (42/42)        
>>>>>> remote: Total 25 (delta 12), reused 25 (delta 12)        
>>>>>> From https://grs-softsvnrepo1.trilliant.local:8081/scm/git/smv6-6lr-core
>>>>>>    029fa64..dee5ad4  develop    -> origin/develop
>>>>>>  * [new branch]      feature/fb-new-exegin-3_6_0 -> 
>>>>>> origin/feature/fb-new-exegin-3_6_0
>>>>>> fatal: remote error: Invalid username or password.
>>>>>>
>>>>>>         at 
>>>>>> org.jenkinsci.plugins.gitclient.CliGitAPIImpl.launchCommandIn(CliGitAPIImpl.java:1710)
>>>>>>         at 
>>>>>> org.jenkinsci.plugins.gitclient.CliGitAPIImpl.launchCommandWithCredentials(CliGitAPIImpl.java:1454)
>>>>>>         at 
>>>>>> org.jenkinsci.plugins.gitclient.CliGitAPIImpl.access$300(CliGitAPIImpl.java:63)
>>>>>>         at 
>>>>>> org.jenkinsci.plugins.gitclient.CliGitAPIImpl$1.execute(CliGitAPIImpl.java:314)
>>>>>>         at 
>>>>>> org.jenkinsci.plugins.gitclient.RemoteGitImpl$CommandInvocationHandler$1.call(RemoteGitImpl.java:152)
>>>>>>         at 
>>>>>> org.jenkinsci.plugins.gitclient.RemoteGitImpl$CommandInvocationHandler$1.call(RemoteGitImpl.java:145)
>>>>>>         at hudson.remoting.UserRequest.perform(UserRequest.java:121)
>>>>>>         at hudson.remoting.UserRequest.perform(UserRequest.java:49)
>>>>>>         at hudson.remoting.Request$2.run(Request.java:326)
>>>>>>         at 
>>>>>> hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:68)
>>>>>>         at java.util.concurrent.FutureTask.run(FutureTask.java:262)
>>>>>>         at 
>>>>>> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
>>>>>>         at 
>>>>>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
>>>>>>         at java.lang.Thread.run(Thread.java:745)
>>>>>>         at ......remote call to grs-jslave(Native Method)
>>>>>>         at 
>>>>>> hudson.remoting.Channel.attachCallSiteStackTrace(Channel.java:1413)
>>>>>>         at hudson.remoting.UserResponse.retrieve(UserRequest.java:221)
>>>>>>         at hudson.remoting.Channel.call(Channel.java:778)
>>>>>>         at 
>>>>>> org.jenkinsci.plugins.gitclient.RemoteGitImpl$CommandInvocationHandler.execute(RemoteGitImpl.java:145)
>>>>>>         at sun.reflect.GeneratedMethodAccessor570.invoke(Unknown Source)
>>>>>>         at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown 
>>>>>> Source)
>>>>>>         at java.lang.reflect.Method.invoke(Unknown Source)
>>>>>>         at 
>>>>>> org.jenkinsci.plugins.gitclient.RemoteGitImpl$CommandInvocationHandler.invoke(RemoteGitImpl.java:131)
>>>>>>         at com.sun.proxy.$Proxy70.execute(Unknown Source)
>>>>>>         at hudson.plugins.git.GitSCM.fetchFrom(GitSCM.java:764)
>>>>>>         ... 11 more
>>>>>> ERROR: null
>>>>>>
>>>>>>
>>>>>> Other tidbits or observations:
>>>>>>
>>>>>>    - It seems to fail when there hasn't been any builds for a while, 
>>>>>>    as if something was cached. I've never seen two failures in rapid 
>>>>>>    succession. When we get this failure, usually immediately relaunching 
>>>>>> the 
>>>>>>    same build will work the second time around.
>>>>>>    - I'm confused by the fact that it seems to try fetching git 
>>>>>>    submodules when it fails. We haven't enabled any advanced submodule 
>>>>>>    behavior and a successful build doesn't show any submodule fetches 
>>>>>> being 
>>>>>>    made.
>>>>>>    - This occurs on both Windows and Linux (We run a similar build 
>>>>>>    on a Linux machine configured as a Jenkins slave).
>>>>>>    - From the windows error, I've read somewhere that it might have 
>>>>>>    something to do with "wincreds" being configured globally while we 
>>>>>> use 
>>>>>>    "store" locally. But how would that apply to Linux? Furthermore I've 
>>>>>>    confirmed that wincred isn't configured on the windows machine.
>>>>>>
>>>>>> On a windows build, we get a slightly different output:
>>>>>>
>>>>>> ERROR: Error fetching remote repo 'origin'
>>>>>> hudson.plugins.git.GitException 
>>>>>> <http://stacktrace.jenkins-ci.org/search?query=hudson.plugins.git.GitException>:
>>>>>>  Failed to fetch from 
>>>>>> https://grs-softsvnrepo1.trilliant.local:8081/scm/git/smv6-6lr-core
>>>>>>         at hudson.plugins.git.GitSCM.fetchFrom(GitSCM.java:766) 
>>>>>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.plugins.git.GitSCM.fetchFrom&entity=method>
>>>>>>         at hudson.plugins.git.GitSCM.retrieveChanges(GitSCM.java:1022) 
>>>>>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.plugins.git.GitSCM.retrieveChanges&entity=method>
>>>>>>         at hudson.plugins.git.GitSCM.checkout(GitSCM.java:1053) 
>>>>>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.plugins.git.GitSCM.checkout&entity=method>
>>>>>>         at 
>>>>>> org.jenkinsci.plugins.multiplescms.MultiSCM.checkout(MultiSCM.java:129) 
>>>>>> <http://stacktrace.jenkins-ci.org/search/?query=org.jenkinsci.plugins.multiplescms.MultiSCM.checkout&entity=method>
>>>>>>         at hudson.scm.SCM 
>>>>>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.scm.SCM.checkout&entity=method>
>>>>>>
>>>>>>

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