My final solution has been to bypass ssh-agent and not use it, since it 
does not work.

I have instead found a way using the Jenkins Script console 
(https://wiki.jenkins.io/display/JENKINS/Jenkins+Script+Console) to 
retrieve the private key and copy it to ~/.ssh/id_rsa and the SCM then 
works.

This works since I am running this in kubernetes and each pod is destroyed 
after its build.

On Friday, 20 October 2017 10:28:41 UTC+11, Jurgen Weber wrote:
>
> issue link: https://issues.jenkins-ci.org/browse/JENKINS-47463
>

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