Maybe you need to have your branch parametrized inside Jenkinsfile
For example:

checkout([$class: 'GitSCM',
>           branches: [[name: "${sha1}"]], // parametrized value
>           doGenerateSubmoduleConfigurations: false,
>           extensions: [[$class: 'CleanBeforeCheckout']],
>           submoduleCfg: [],
>           userRemoteConfigs: [[credentialsId: 'credentialID', name:
> 'origin', refspec: "+refs/pull/*:refs/remotes/origin/pr/*", url:
> 'githubSshUrl']]])
>


On Mon, Aug 6, 2018 at 2:36 PM, Ramanathan Muthaiah <rus.cah...@gmail.com>
wrote:

> Hello,
>
> We're running Jenkins v2.32.2 (agreed, it's very very old, but this is in
> the enterprise) and am trying to setup multibranch for one of Git repos
> (hosted in github enterprise - GHE).
>
> For every build job, triggered by Jenkins multibranch, pipeline kicks in
> but Jenkinsfile changes in PR branch isn't picked but from 'master' !
>
> I have searched thru' cloudbees knowledge base, and various other forums.
> GHE user, who created the PR, has 'write' access in that GHE repo.
>
> Inspite of this config and setup, PR builds are falling back to
> Jenkinsfile from the 'master'. Is there a way to know what trust is lacking
> and how to fix this issue ?
>
> /Ram
>
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