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https://issues.apache.org/jira/browse/JS2-973?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=12705862#action_12705862
]
Randy Watler commented on JS2-973:
----------------------------------
The demo web application descriptor, (web.xml), issue has been resolved with
commit svn version 771506.
However, we are now facing an internal WAS thread deadlock during deployment of
J2 "full" demo-dbpsml configuration.
1LKDEADLOCK Deadlock detected !!!
NULL ---------------------
NULL
2LKDEADLOCKTHR Thread "server.startup : 1" (0x8FAEC100)
3LKDEADLOCKWTR is waiting for:
4LKDEADLOCKMON sys_mon_t:0x8F6A44F0 infl_mon_t: 0x8F6A4530:
4LKDEADLOCKOBJ
com/ibm/ws/classloader/compoundclassloa...@99bd7c28/99BD7C34:
3LKDEADLOCKOWN which is owned by:
2LKDEADLOCKTHR Thread "Timer-6" (0x08BEF400)
3LKDEADLOCKWTR which is waiting for:
4LKDEADLOCKMON sys_mon_t:0x8F6A45A0 infl_mon_t: 0x8F6A45E0:
4LKDEADLOCKOBJ
com/ibm/ws/classloader/compoundclassloa...@99bb9b78/99BB9B84:
3LKDEADLOCKOWN which is owned by:
2LKDEADLOCKTHR Thread "server.startup : 1" (0x8FAEC100)
3XMTHREADINFO "Timer-6" (TID:0x08BEF400, sys_thread_t:0x090960B4, state:B,
native ID:0x00001AA2) prio=5
4XESTACKTRACE at
java/lang/ClassLoader.loadClass(ClassLoader.java:595(Compiled Code))
4XESTACKTRACE at
com/ibm/ws/classloader/CompoundClassLoader.loadClass(CompoundClassLoader.java:375(Compiled
Code))
4XESTACKTRACE at
java/lang/ClassLoader.loadClass(ClassLoader.java:595(Compiled Code))
4XESTACKTRACE at java/lang/J9VMInternals.verifyImpl(Native Method)
4XESTACKTRACE at
java/lang/J9VMInternals.verify(J9VMInternals.java:68(Compiled Code))
4XESTACKTRACE at
java/lang/J9VMInternals.initialize(J9VMInternals.java:129(Compiled Code))
4XESTACKTRACE at
com/sun/xml/bind/v2/model/nav/ReflectionNavigator.<clinit>(ReflectionNavigator.java:73)
4XESTACKTRACE at java/lang/J9VMInternals.initializeImpl(Native Method)
4XESTACKTRACE at
java/lang/J9VMInternals.initialize(J9VMInternals.java:194(Compiled Code))
4XESTACKTRACE at
com/sun/xml/bind/v2/model/nav/Navigator.<clinit>(Navigator.java:256)
4XESTACKTRACE at java/lang/J9VMInternals.initializeImpl(Native Method)
4XESTACKTRACE at
java/lang/J9VMInternals.initialize(J9VMInternals.java:194(Compiled Code))
4XESTACKTRACE at
com/sun/xml/bind/v2/model/impl/RuntimeModelBuilder.<init>(RuntimeModelBuilder.java:89)
4XESTACKTRACE at
com/sun/xml/bind/v2/runtime/JAXBContextImpl.getTypeInfoSet(JAXBContextImpl.java:432)
4XESTACKTRACE at
com/sun/xml/bind/v2/runtime/JAXBContextImpl.<init>(JAXBContextImpl.java:297)
4XESTACKTRACE at
com/sun/xml/bind/v2/ContextFactory.createContext(ContextFactory.java:139)
4XESTACKTRACE at
com/sun/xml/bind/v2/ContextFactory.createContext(ContextFactory.java:117)
4XESTACKTRACE at
com/sun/xml/bind/v2/ContextFactory.createContext(ContextFactory.java:188)
4XESTACKTRACE at sun/reflect/NativeMethodAccessorImpl.invoke0(Native
Method)
4XESTACKTRACE at
sun/reflect/NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:79(Compiled
Code))
4XESTACKTRACE at
sun/reflect/DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43(Compiled
Code))
4XESTACKTRACE at
java/lang/reflect/Method.invoke(Method.java:618(Compiled Code))
4XESTACKTRACE at
javax/xml/bind/ContextFinder.newInstance(ContextFinder.java:128)
4XESTACKTRACE at
javax/xml/bind/ContextFinder.find(ContextFinder.java:277)
4XESTACKTRACE at
javax/xml/bind/JAXBContext.newInstance(JAXBContext.java:372)
4XESTACKTRACE at
javax/xml/bind/JAXBContext.newInstance(JAXBContext.java:337)
4XESTACKTRACE at
org/apache/pluto/container/impl/PortletAppDescriptorServiceImpl.read(PortletAppDescriptorServiceImpl.java:148)
4XESTACKTRACE at
org/apache/jetspeed/descriptor/JetspeedDescriptorServiceImpl.read(JetspeedDescriptorServiceImpl.java:144)
4XESTACKTRACE at
org/apache/jetspeed/util/descriptor/PortletApplicationWar.createPortletApp(PortletApplicationWar.java:165)
4XESTACKTRACE at
org/apache/jetspeed/tools/pamanager/PortletApplicationManager.registerPortletApplication(PortletApplicationManager.java:352)
4XESTACKTRACE at
org/apache/jetspeed/tools/pamanager/PortletApplicationManager.attemptStartPA(PortletApplicationManager.java:528)
4XESTACKTRACE at
org/apache/jetspeed/tools/pamanager/PortletApplicationManager.tryStartPortletApplication(PortletApplicationManager.java:244)
4XESTACKTRACE at sun/reflect/NativeMethodAccessorImpl.invoke0(Native
Method)
4XESTACKTRACE at
sun/reflect/NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:79(Compiled
Code))
4XESTACKTRACE at
sun/reflect/DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43(Compiled
Code))
4XESTACKTRACE at
java/lang/reflect/Method.invoke(Method.java:618(Compiled Code))
4XESTACKTRACE at
org/springframework/aop/support/AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
4XESTACKTRACE at
org/springframework/aop/framework/ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:182)
4XESTACKTRACE at
org/springframework/aop/framework/ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:149)
4XESTACKTRACE at
org/springframework/transaction/interceptor/TransactionInterceptor.invoke(TransactionInterceptor.java:106)
4XESTACKTRACE at
org/springframework/aop/framework/ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
4XESTACKTRACE at
org/springframework/aop/framework/JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204)
4XESTACKTRACE at $Proxy16.tryStartPortletApplication(Bytecode PC:57)
4XESTACKTRACE at
org/apache/jetspeed/tools/pamanager/PortletApplicationManager.retryStartPortletApplication(PortletApplicationManager.java:214)
4XESTACKTRACE at
org/apache/jetspeed/tools/pamanager/PortletApplicationManager.startPortletApplication(PortletApplicationManager.java:195)
4XESTACKTRACE at sun/reflect/NativeMethodAccessorImpl.invoke0(Native
Method)
4XESTACKTRACE at
sun/reflect/NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:79(Compiled
Code))
4XESTACKTRACE at
sun/reflect/DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43(Compiled
Code))
4XESTACKTRACE at
java/lang/reflect/Method.invoke(Method.java:618(Compiled Code))
4XESTACKTRACE at
org/springframework/aop/support/AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
4XESTACKTRACE at
org/springframework/aop/framework/JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:198)
4XESTACKTRACE at $Proxy16.startPortletApplication(Bytecode PC:31)
4XESTACKTRACE at
org/apache/jetspeed/container/JetspeedContainerServlet.attemptStart(JetspeedContainerServlet.java:191)
4XESTACKTRACE at
org/apache/jetspeed/container/JetspeedContainerServlet$1.run(JetspeedContainerServlet.java:162)
4XESTACKTRACE at java/util/TimerThread.mainLoop(Timer.java:527)
4XESTACKTRACE at java/util/TimerThread.run(Timer.java:477)
3XMTHREADINFO "server.startup : 1" (TID:0x8FAEC100,
sys_thread_t:0x903CA8F8, state:B, native ID:0x00001A76) prio=5
4XESTACKTRACE at
java/lang/ClassLoader.loadClass(ClassLoader.java:595(Compiled Code))
4XESTACKTRACE at
org/apache/jetspeed/security/impl/RdbmsPolicy.implies(RdbmsPolicy.java:102)
4XESTACKTRACE at
org/apache/jetspeed/security/impl/JaasPolicyCoordinator.implies(JaasPolicyCoordinator.java:79)
4XESTACKTRACE at
java/security/ProtectionDomain.implies(ProtectionDomain.java:221(Compiled Code))
4XESTACKTRACE at
org/eclipse/osgi/framework/internal/core/SystemBundle.hasPermission(SystemBundle.java:265)
4XESTACKTRACE at
org/eclipse/osgi/internal/module/PermissionChecker.checkPermission(PermissionChecker.java:53)
4XESTACKTRACE at
org/eclipse/osgi/internal/module/ResolverConstraint.isSatisfiedBy(ResolverConstraint.java:45)
4XESTACKTRACE at
org/eclipse/osgi/internal/module/ResolverImpl.rewireImport(ResolverImpl.java:204)
4XESTACKTRACE at
org/eclipse/osgi/internal/module/ResolverImpl.rewireBundle(ResolverImpl.java:153)
4XESTACKTRACE at
org/eclipse/osgi/internal/module/ResolverImpl.rewireRequire(ResolverImpl.java:190)
4XESTACKTRACE at
org/eclipse/osgi/internal/module/ResolverImpl.rewireBundle(ResolverImpl.java:148)
4XESTACKTRACE at
org/eclipse/osgi/internal/module/ResolverImpl.rewireImport(ResolverImpl.java:225)
4XESTACKTRACE at
org/eclipse/osgi/internal/module/ResolverImpl.rewireBundle(ResolverImpl.java:153)
4XESTACKTRACE at
org/eclipse/osgi/internal/module/ResolverImpl.rewireRequire(ResolverImpl.java:190)
4XESTACKTRACE at
org/eclipse/osgi/internal/module/ResolverImpl.rewireBundle(ResolverImpl.java:148)
4XESTACKTRACE at
org/eclipse/osgi/internal/module/ResolverImpl.rewireBundles(ResolverImpl.java:137)
4XESTACKTRACE at
org/eclipse/osgi/internal/module/ResolverImpl.initialize(ResolverImpl.java:101)
4XESTACKTRACE at
org/eclipse/osgi/internal/module/ResolverImpl.resolveDynamicImport(ResolverImpl.java:1083)
4XESTACKTRACE at
org/eclipse/osgi/internal/resolver/StateImpl.linkDynamicImport(StateImpl.java:605(Compiled
Code))
4XESTACKTRACE at
org/eclipse/osgi/framework/internal/core/BundleLoader.findDynamicSource(BundleLoader.java:874(Compiled
Code))
4XESTACKTRACE at
org/eclipse/osgi/framework/internal/core/BundleLoader.findClass(BundleLoader.java:391(Compiled
Code))
4XESTACKTRACE at
org/eclipse/osgi/framework/internal/core/BundleLoader.findClass(BundleLoader.java:347(Compiled
Code))
4XESTACKTRACE at
org/eclipse/osgi/internal/baseadaptor/DefaultClassLoader.loadClass(DefaultClassLoader.java:83(Compiled
Code))
4XESTACKTRACE at
java/lang/ClassLoader.loadClass(ClassLoader.java:621(Compiled Code))
4XESTACKTRACE at
com/ibm/ws/bootstrap/ExtClassLoader.loadClass(ExtClassLoader.java:87(Compiled
Code))
4XESTACKTRACE at
java/lang/ClassLoader.loadClass(ClassLoader.java:595(Compiled Code))
4XESTACKTRACE at
com/ibm/ws/classloader/ProtectionClassLoader.loadClass(ProtectionClassLoader.java:58(Compiled
Code))
4XESTACKTRACE at
com/ibm/ws/classloader/ProtectionClassLoader.loadClass(ProtectionClassLoader.java:54(Compiled
Code))
4XESTACKTRACE at
com/ibm/ws/classloader/CompoundClassLoader.loadClass(CompoundClassLoader.java:394(Compiled
Code))
4XESTACKTRACE at
java/lang/ClassLoader.loadClass(ClassLoader.java:595(Compiled Code))
4XESTACKTRACE at
com/ibm/ws/classloader/CompoundClassLoader.loadClass(CompoundClassLoader.java:394(Compiled
Code))
4XESTACKTRACE at
java/lang/ClassLoader.loadClass(ClassLoader.java:595(Compiled Code))
4XESTACKTRACE at
java/util/ResourceBundle.loadBundle(ResourceBundle.java:1075)
4XESTACKTRACE at
java/util/ResourceBundle.findBundle(ResourceBundle.java:942(Compiled Code))
4XESTACKTRACE at
java/util/ResourceBundle.getBundleImpl(ResourceBundle.java:760(Compiled Code))
4XESTACKTRACE at
java/util/ResourceBundle.getBundle(ResourceBundle.java:716)
4XESTACKTRACE at
com/ibm/ws/portletcontainer/om/common/impl/LanguageSetImpl.loadResourceBundle(LanguageSetImpl.java:135)
4XESTACKTRACE at
com/ibm/ws/portletcontainer/om/common/impl/LanguageSetImpl.init(LanguageSetImpl.java:99)
4XESTACKTRACE at
com/ibm/ws/portletcontainer/om/translator/wccm/WCCMPortletDefinitionTranslator.createLanguageSet(WCCMPortletDefinitionTranslator.java:110)
4XESTACKTRACE at
com/ibm/ws/portletcontainer/om/translator/wccm/WCCMPortletDefinitionTranslator.translate(WCCMPortletDefinitionTranslator.java:72)
4XESTACKTRACE at
com/ibm/ws/portletcontainer/om/translator/wccm/WCCMPortletApplicationDefinitionTranslator.translate(WCCMPortletApplicationDefinitionTranslator.java:63)
4XESTACKTRACE at
com/ibm/ws/portletcontainer/om/translator/wccm/WCCMWebApplicationDefinitionTranslator.translate(WCCMWebApplicationDefinitionTranslator.java:37)
4XESTACKTRACE at
com/ibm/ws/portletcontainer/runtime/PortletMetaDataListener.metaDataCreated(PortletMetaDataListener.java:74)
4XESTACKTRACE at
com/ibm/ws/runtime/component/MetaDataMgrImpl.fireMetaDataCreated(MetaDataMgrImpl.java:188)
4XESTACKTRACE at
com/ibm/ws/webcontainer/metadata/WebMetaDataFactory.createMetaData(WebMetaDataFactory.java:205)
4XESTACKTRACE at
com/ibm/ws/runtime/component/MetaDataMgrImpl.createMetaDataFromFactories(MetaDataMgrImpl.java:172)
4XESTACKTRACE at
com/ibm/ws/runtime/component/MetaDataMgrImpl.createMetaData(MetaDataMgrImpl.java:306)
4XESTACKTRACE at
com/ibm/ws/runtime/component/DeployedModuleImpl.start(DeployedModuleImpl.java:563)
4XESTACKTRACE at
com/ibm/ws/runtime/component/DeployedApplicationImpl.start(DeployedApplicationImpl.java:817)
4XESTACKTRACE at
com/ibm/ws/runtime/component/ApplicationMgrImpl.startApplication(ApplicationMgrImpl.java:950)
4XESTACKTRACE at
com/ibm/ws/runtime/component/ApplicationMgrImpl$AppInitializer.run(ApplicationMgrImpl.java:2120)
4XESTACKTRACE at
com/ibm/wsspi/runtime/component/WsComponentImpl$_AsynchInitializer.run(WsComponentImpl.java:342)
4XESTACKTRACE at
com/ibm/ws/util/ThreadPool$Worker.run(ThreadPool.java:1469)
> Running Jetspeed 2.2 on Websphere 6.1 / Oracle10
> ------------------------------------------------
>
> Key: JS2-973
> URL: https://issues.apache.org/jira/browse/JS2-973
> Project: Jetspeed 2
> Issue Type: Task
> Affects Versions: 2.2.0
> Reporter: Ate Douma
> Assignee: Randy Watler
> Fix For: 2.2.0
>
>
> Testing current Jetspeed 2.2-SNAPSHOT on Websphere 6.1 I;'ve encountered some
> issues which I'm recording here for the record and/or as outstanding TODO
> tasks.
> - xml-apis jar: all the JAXP apis are now part of Java5+ and having this jar
> in WEB-INF/lib causes problems on Websphere
> TODO: remove/exclude this dependency in maven poms
> - stax-api-1.0.1.jar: this artifact (incorrectly) contains
> javax.xml.namespace.* classes (QName specifically) which breaks JAXB on
> Websphere
> TODO: upgrade to stax-api-1.0.2.jar which no longer contains the
> javax.xml.namespace package
> - DDLUtils generates SEQUENCE seq_SECURITY_DOMAIN_DOMAIN_ID and TRIGGER
> trg_SECURITY_DOMAIN_DOMAIN_ID for SECURITY_DOMAIN.UIX_DOMAIN_NAME for an
> Oracle database
> During creation of the schema in the database the trigger code fails to be
> created. However, both the sequence and the trigger are not needed anyway.
> TODO: figure out how to disable the sequence and trigger generation from
> DDLUtils
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