as a follow up to this...

i made sure that apache could run the nmap binary 
if I run the Manual Discovery I get the following information in the 
/usr/local/www/jffnms/engine/temp directory 

<r...@nms:temp># tail -f 4b792bba287c9.log 
# Nmap 5.21 scan initiated Mon Feb 15 13:10:50 2010 as: /usr/local/bin/nmap -sU 
-p1-500,600-1024 --host_timeout 60000 -n -oG 
/usr/local/www/jffnms/engine/temp/4b792bba287c9.log 192.168.1.50
Host: 192.168.1.50 ()   Status: Up
Host: 192.168.1.50 ()   Ports: 111/open/udp//rpcbind///, 161/open/udp//snmp///  
Ignored State: open|filtered (923)
# Nmap done at Mon Feb 15 13:11:07 2010 -- 1 IP address (1 host up) scanned in 
16.99 seconds


# Nmap 5.21 scan initiated Mon Feb 15 13:11:07 2010 as: /usr/local/bin/nmap -sT 
-p1-500,600-1024 -n -oG /usr/local/www/jffnms/engine/temp/4b792bcb2a79a.log 
192.168.1.50
Host: 192.168.1.50 ()   Status: Up
Host: 192.168.1.50 ()   Ports: 22/open/tcp//ssh///, 25/open/tcp//smtp///, 
80/open/tcp//http///, 110/open/tcp//pop3///, 111/open/tcp//rpcbind///, 
143/open/tcp//imap///, 199/open/tcp//smux///   Ignored State: filtered (918)
# Nmap done at Mon Feb 15 13:11:13 2010 -- 1 IP address (1 host up) scanned in 
6.54 seconds


So in the log / temp files at least JFFNMS and nmap is seeing the open ports 

UDP 111 and 161
TCP 22 25 80 110 143 and 199

but does no or can not add it to the output of discovered interfaces


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