[
https://issues.apache.org/jira/browse/ARROW-12026?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17306500#comment-17306500
]
Karthikeyan Janakiraman commented on ARROW-12026:
-------------------------------------------------
[~jonkeane] I think I am almost there after manually downloading the binaries
and setting the URL variables.
Currently struck at awssdk_ep-build related error, logs doesn't help much.
Could you please advise what could resolve this please ?
{code:java}
[root@ea90f76f63be app]# R CMD INSTALL arrow_3.0.0.tar.gz
* installing to library ‘/usr/lib64/R/library’
* installing *source* package ‘arrow’ ...
** package ‘arrow’ successfully unpacked and MD5 sums checked
** using staged installation
trying URL
'https://dl.bintray.com/ursalabs/arrow-r/libarrow/src/arrow-3.0.0.zip'
Error in download.file(from_url, to_file, quiet = quietly) :
cannot open URL
'https://dl.bintray.com/ursalabs/arrow-r/libarrow/src/arrow-3.0.0.zip'
trying URL
'https://www.apache.org/dyn/closer.lua?action=download&filename=arrow/arrow-3.0.0/apache-arrow-3.0.0.tar.gz'
Content type 'application/x-gzip' length 8200790 bytes (7.8 MB)
==================================================
downloaded 7.8 MB*** Successfully retrieved C++ source
*** Building C++ libraries
*** Building with MAKEFLAGS= -j2
**** arrow with
SOURCE_DIR="/tmp/Rtmpz4nE7G/file591d7022962e/apache-arrow-3.0.0/cpp"
BUILD_DIR="/tmp/Rtmpz4nE7G/file591d48481e24" DEST_DIR="libarrow/arrow-3.0.0"
CMAKE="/usr/bin/cmake3" CC="gcc -m64 -std=gnu99" CXX="g++ -m64 -std=gnu++11"
LDFLAGS="-Wl,-z,relro" ARROW_S3=ON ARROW_MIMALLOC=OFF
++ pwd
+ : /tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow
+ : /tmp/Rtmpz4nE7G/file591d7022962e/apache-arrow-3.0.0/cpp
+ : /tmp/Rtmpz4nE7G/file591d48481e24
+ : libarrow/arrow-3.0.0
+ : /usr/bin/cmake3
++ cd /tmp/Rtmpz4nE7G/file591d7022962e/apache-arrow-3.0.0/cpp
++ pwd
+ SOURCE_DIR=/tmp/Rtmpz4nE7G/file591d7022962e/apache-arrow-3.0.0/cpp
++ mkdir -p libarrow/arrow-3.0.0
++ cd libarrow/arrow-3.0.0
++ pwd
+ DEST_DIR=/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0
+ '[' '' = '' ']'
+ which ninja
+ '[' '' = false ']'
+ ARROW_DEFAULT_PARAM=OFF
+ mkdir -p /tmp/Rtmpz4nE7G/file591d48481e24
+ pushd /tmp/Rtmpz4nE7G/file591d48481e24
/tmp/Rtmpz4nE7G/file591d48481e24 /tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow
+ /usr/bin/cmake3 -DARROW_BOOST_USE_SHARED=OFF -DARROW_BUILD_TESTS=OFF
-DARROW_BUILD_SHARED=OFF -DARROW_BUILD_STATIC=ON -DARROW_COMPUTE=ON
-DARROW_CSV=ON -DARROW_DATASET=ON -DARROW_DEPENDENCY_SOURCE=BUNDLED
-DARROW_FILESYSTEM=ON -DARROW_JEMALLOC=ON -DARROW_MIMALLOC=OFF -DARROW_JSON=ON
-DARROW_PARQUET=ON -DARROW_S3=ON -DARROW_WITH_BROTLI=OFF -DARROW_WITH_BZ2=OFF
-DARROW_WITH_LZ4=OFF -DARROW_WITH_SNAPPY=OFF -DARROW_WITH_UTF8PROC=OFF
-DARROW_WITH_ZLIB=OFF -DARROW_WITH_ZSTD=OFF -DCMAKE_BUILD_TYPE=Release
-DCMAKE_INSTALL_LIBDIR=lib
-DCMAKE_INSTALL_PREFIX=/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0
-DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON
-DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_UNITY_BUILD=ON -G 'Unix
Makefiles' /tmp/Rtmpz4nE7G/file591d7022962e/apache-arrow-3.0.0/cpp
-- Building using CMake version: 3.17.5
-- The C compiler identification is GNU 8.3.1
-- The CXX compiler identification is GNU 8.3.1
-- Check for working C compiler: /opt/rh/devtoolset-8/root/usr/bin/gcc
-- Check for working C compiler: /opt/rh/devtoolset-8/root/usr/bin/gcc - works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /opt/rh/devtoolset-8/root/usr/bin/g++
-- Check for working CXX compiler: /opt/rh/devtoolset-8/root/usr/bin/g++ - works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Arrow version: 3.0.0 (full: '3.0.0')
-- Arrow SO version: 300 (full: 300.0.0)
-- clang-tidy not found
-- clang-format not found
-- Could NOT find ClangTools (missing: CLANG_FORMAT_BIN CLANG_TIDY_BIN)
-- infer not found
fatal: Not a git repository (or any of the parent directories): .git
-- Found Python3: /opt/anaconda3-4.4.0/bin/python3.6 (found version "3.6.1")
found components: Interpreter
-- Found cpplint executable at
/tmp/Rtmpz4nE7G/file591d7022962e/apache-arrow-3.0.0/cpp/build-support/cpplint.py
-- System processor: x86_64
-- Performing Test CXX_SUPPORTS_SSE4_2
-- Performing Test CXX_SUPPORTS_SSE4_2 - Success
-- Performing Test CXX_SUPPORTS_AVX2
-- Performing Test CXX_SUPPORTS_AVX2 - Success
-- Performing Test CXX_SUPPORTS_AVX512
-- Performing Test CXX_SUPPORTS_AVX512 - Success
-- Arrow build warning level: PRODUCTION
Using ld linker
Configured for RELEASE build (set with cmake
-DCMAKE_BUILD_TYPE={release,debug,...})
-- Build Type: RELEASE
-- Using BUNDLED approach to find dependencies
-- ARROW_ABSL_BUILD_VERSION: 0f3bb466b868b523cf1dc9b2aaaed65c77b28862
-- ARROW_AWSSDK_BUILD_VERSION: 1.8.90
-- ARROW_AWS_CHECKSUMS_BUILD_VERSION: v0.1.5
-- ARROW_AWS_C_COMMON_BUILD_VERSION: v0.4.59
-- ARROW_AWS_C_EVENT_STREAM_BUILD_VERSION: v0.1.5
-- ARROW_BOOST_BUILD_VERSION: 1.71.0
-- ARROW_BROTLI_BUILD_VERSION: v1.0.7
-- ARROW_BZIP2_BUILD_VERSION: 1.0.8
-- ARROW_CARES_BUILD_VERSION: 1.16.1
-- ARROW_GBENCHMARK_BUILD_VERSION: v1.5.2
-- ARROW_GFLAGS_BUILD_VERSION: v2.2.2
-- ARROW_GLOG_BUILD_VERSION: v0.4.0
-- ARROW_GRPC_BUILD_VERSION: v1.33.2
-- ARROW_GTEST_BUILD_VERSION: 1.10.0
-- ARROW_JEMALLOC_BUILD_VERSION: 5.2.1
-- ARROW_LZ4_BUILD_VERSION: v1.9.2
-- ARROW_MIMALLOC_BUILD_VERSION: v1.6.4
-- ARROW_ORC_BUILD_VERSION: 1.6.2
-- ARROW_PROTOBUF_BUILD_VERSION: v3.13.0
-- ARROW_RAPIDJSON_BUILD_VERSION: 1a803826f1197b5e30703afe4b9c0e7dd48074f5
-- ARROW_RE2_BUILD_VERSION: 2019-08-01
-- ARROW_SNAPPY_BUILD_VERSION: 1.1.8
-- ARROW_THRIFT_BUILD_VERSION: 0.12.0
-- ARROW_THRIFT_BUILD_MD5_CHECKSUM: 3deebbb4d1ca77dd9c9e009a1ea02183
-- ARROW_UTF8PROC_BUILD_VERSION: v2.5.0
-- ARROW_ZLIB_BUILD_VERSION: 1.2.11
-- ARROW_ZSTD_BUILD_VERSION: v1.4.5
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Found Threads: TRUE
-- Looking for __SIZEOF_INT128__
-- Looking for __SIZEOF_INT128__ - found
-- Boost include dir:
/tmp/Rtmpz4nE7G/file591d48481e24/boost_ep-prefix/src/boost_ep
-- Boost libraries: boost_system_static;boost_filesystem_static
-- Found OpenSSL: /usr/lib64/libcrypto.so (found suitable version "1.0.2k",
minimum required is "1.0.2")
-- Found OpenSSL Crypto Library: /usr/lib64/libcrypto.so
-- Building with OpenSSL (Version: 1.0.2k) support
Building Apache Thrift from source
-- Building (vendored) jemalloc from source
-- Building RapidJSON from source
-- Building ZLIB from source
-- Building RE2 from source
-- Found hdfs.h at:
/tmp/Rtmpz4nE7G/file591d7022962e/apache-arrow-3.0.0/cpp/thirdparty/hadoop/include/hdfs.h
Building AWS C++ SDK from source
-- Found CURL: /usr/lib64/libcurl.so (found version "7.29.0")
-- Found AWS SDK headers:
/tmp/Rtmpz4nE7G/file591d48481e24/awssdk_ep-install/include
-- Found AWS SDK libraries:
aws-cpp-sdk-identity-management;aws-cpp-sdk-sts;aws-cpp-sdk-cognito-identity;aws-cpp-sdk-s3;aws-cpp-sdk-core;AWS::aws-c-event-stream;AWS::aws-checksums;AWS::aws-c-common
-- All bundled static libraries:
thrift::thrift;jemalloc::jemalloc;ZLIB::ZLIB;re2::re2;aws-cpp-sdk-identity-management;aws-cpp-sdk-sts;aws-cpp-sdk-cognito-identity;aws-cpp-sdk-s3;aws-cpp-sdk-core;AWS::aws-c-event-stream;AWS::aws-checksums;AWS::aws-c-common
-- CMAKE_C_FLAGS: -O3 -DNDEBUG -Wall -fno-semantic-interposition -msse4.2
-- CMAKE_CXX_FLAGS: -Wno-noexcept-type -Wno-subobject-linkage
-fdiagnostics-color=always -O3 -DNDEBUG -Wall -fno-semantic-interposition
-msse4.2
-- Looking for backtrace
-- Looking for backtrace - found
-- backtrace facility detected in default set of libraries
-- Found Backtrace: /usr/include
-- Creating bundled static library target arrow_bundled_dependencies at
/tmp/Rtmpz4nE7G/file591d48481e24/release/libarrow_bundled_dependencies.a
-- ---------------------------------------------------------------------
-- Arrow version: 3.0.0
--
-- Build configuration summary:
-- Generator: Unix Makefiles
-- Build type: RELEASE
-- Source directory: /tmp/Rtmpz4nE7G/file591d7022962e/apache-arrow-3.0.0/cpp
-- Install prefix:
/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0
--
-- Compile and link options:
--
-- ARROW_CXXFLAGS="" [default=""]
-- Compiler flags to append when compiling Arrow
-- ARROW_BUILD_STATIC=ON [default=ON]
-- Build static libraries
-- ARROW_BUILD_SHARED=OFF [default=ON]
-- Build shared libraries
-- ARROW_PACKAGE_KIND="" [default=""]
-- Arbitrary string that identifies the kind of package
-- (for informational purposes)
-- ARROW_GIT_ID="" [default=""]
-- The Arrow git commit id (if any)
-- ARROW_GIT_DESCRIPTION="" [default=""]
-- The Arrow git commit description (if any)
-- ARROW_NO_DEPRECATED_API=OFF [default=OFF]
-- Exclude deprecated APIs from build
-- ARROW_USE_CCACHE=ON [default=ON]
-- Use ccache when compiling (if available)
-- ARROW_USE_LD_GOLD=OFF [default=OFF]
-- Use ld.gold for linking on Linux (if available)
-- ARROW_USE_PRECOMPILED_HEADERS=OFF [default=OFF]
-- Use precompiled headers when compiling
-- ARROW_SIMD_LEVEL=SSE4_2 [default=NONE|SSE4_2|AVX2|AVX512]
-- Compile-time SIMD optimization level
-- ARROW_RUNTIME_SIMD_LEVEL=MAX [default=NONE|SSE4_2|AVX2|AVX512|MAX]
-- Max runtime SIMD optimization level
-- ARROW_ARMV8_ARCH=armv8-a [default=armv8-a|armv8-a+crc+crypto]
-- Arm64 arch and extensions
-- ARROW_ALTIVEC=ON [default=ON]
-- Build with Altivec if compiler has support
-- ARROW_RPATH_ORIGIN=OFF [default=OFF]
-- Build Arrow libraries with RATH set to $ORIGIN
-- ARROW_INSTALL_NAME_RPATH=ON [default=ON]
-- Build Arrow libraries with install_name set to @rpath
-- ARROW_GGDB_DEBUG=ON [default=ON]
-- Pass -ggdb flag to debug builds
--
-- Test and benchmark options:
--
-- ARROW_BUILD_EXAMPLES=OFF [default=OFF]
-- Build the Arrow examples
-- ARROW_BUILD_TESTS=OFF [default=OFF]
-- Build the Arrow googletest unit tests
-- ARROW_ENABLE_TIMING_TESTS=ON [default=ON]
-- Enable timing-sensitive tests
-- ARROW_BUILD_INTEGRATION=OFF [default=OFF]
-- Build the Arrow integration test executables
-- ARROW_BUILD_BENCHMARKS=OFF [default=OFF]
-- Build the Arrow micro benchmarks
-- ARROW_BUILD_BENCHMARKS_REFERENCE=OFF [default=OFF]
-- Build the Arrow micro reference benchmarks
-- ARROW_TEST_LINKAGE=static [default=shared|static]
-- Linkage of Arrow libraries with unit tests executables.
-- ARROW_FUZZING=OFF [default=OFF]
-- Build Arrow Fuzzing executables
-- ARROW_LARGE_MEMORY_TESTS=OFF [default=OFF]
-- Enable unit tests which use large memory
--
-- Lint options:
--
-- ARROW_ONLY_LINT=OFF [default=OFF]
-- Only define the lint and check-format targets
-- ARROW_VERBOSE_LINT=OFF [default=OFF]
-- If off, 'quiet' flags will be passed to linting tools
-- ARROW_GENERATE_COVERAGE=OFF [default=OFF]
-- Build with C++ code coverage enabled
--
-- Checks options:
--
-- ARROW_TEST_MEMCHECK=OFF [default=OFF]
-- Run the test suite using valgrind --tool=memcheck
-- ARROW_USE_ASAN=OFF [default=OFF]
-- Enable Address Sanitizer checks
-- ARROW_USE_TSAN=OFF [default=OFF]
-- Enable Thread Sanitizer checks
-- ARROW_USE_UBSAN=OFF [default=OFF]
-- Enable Undefined Behavior sanitizer checks
--
-- Project component options:
--
-- ARROW_BUILD_UTILITIES=OFF [default=OFF]
-- Build Arrow commandline utilities
-- ARROW_COMPUTE=ON [default=OFF]
-- Build the Arrow Compute Modules
-- ARROW_CSV=ON [default=OFF]
-- Build the Arrow CSV Parser Module
-- ARROW_CUDA=OFF [default=OFF]
-- Build the Arrow CUDA extensions (requires CUDA toolkit)
-- ARROW_DATASET=ON [default=OFF]
-- Build the Arrow Dataset Modules
-- ARROW_FILESYSTEM=ON [default=OFF]
-- Build the Arrow Filesystem Layer
-- ARROW_FLIGHT=OFF [default=OFF]
-- Build the Arrow Flight RPC System (requires GRPC, Protocol Buffers)
-- ARROW_GANDIVA=OFF [default=OFF]
-- Build the Gandiva libraries
-- ARROW_HDFS=OFF [default=OFF]
-- Build the Arrow HDFS bridge
-- ARROW_HIVESERVER2=OFF [default=OFF]
-- Build the HiveServer2 client and Arrow adapter
-- ARROW_IPC=ON [default=ON]
-- Build the Arrow IPC extensions
-- ARROW_JEMALLOC=ON [default=ON]
-- Build the Arrow jemalloc-based allocator
-- ARROW_JNI=OFF [default=OFF]
-- Build the Arrow JNI lib
-- ARROW_JSON=ON [default=OFF]
-- Build Arrow with JSON support (requires RapidJSON)
-- ARROW_MIMALLOC=OFF [default=OFF]
-- Build the Arrow mimalloc-based allocator
-- ARROW_PARQUET=ON [default=OFF]
-- Build the Parquet libraries
-- ARROW_ORC=OFF [default=OFF]
-- Build the Arrow ORC adapter
-- ARROW_PLASMA=OFF [default=OFF]
-- Build the plasma object store along with Arrow
-- ARROW_PLASMA_JAVA_CLIENT=OFF [default=OFF]
-- Build the plasma object store java client
-- ARROW_PYTHON=OFF [default=OFF]
-- Build the Arrow CPython extensions
-- ARROW_S3=ON [default=OFF]
-- Build Arrow with S3 support (requires the AWS SDK for C++)
-- ARROW_TENSORFLOW=OFF [default=OFF]
-- Build Arrow with TensorFlow support enabled
-- ARROW_TESTING=OFF [default=OFF]
-- Build the Arrow testing libraries
--
-- Thirdparty toolchain options:
--
-- ARROW_DEPENDENCY_SOURCE=BUNDLED [default=AUTO|BUNDLED|SYSTEM|CONDA|BREW]
-- Method to use for acquiring arrow's build dependencies
-- ARROW_VERBOSE_THIRDPARTY_BUILD=OFF [default=OFF]
-- Show output from ExternalProjects rather than just logging to files
-- ARROW_DEPENDENCY_USE_SHARED=ON [default=ON]
-- Link to shared libraries
-- ARROW_BOOST_USE_SHARED=OFF [default=ON]
-- Rely on boost shared libraries where relevant
-- ARROW_BROTLI_USE_SHARED=ON [default=ON]
-- Rely on Brotli shared libraries where relevant
-- ARROW_BZ2_USE_SHARED=ON [default=ON]
-- Rely on Bz2 shared libraries where relevant
-- ARROW_GFLAGS_USE_SHARED=ON [default=ON]
-- Rely on GFlags shared libraries where relevant
-- ARROW_GRPC_USE_SHARED=ON [default=ON]
-- Rely on gRPC shared libraries where relevant
-- ARROW_LZ4_USE_SHARED=ON [default=ON]
-- Rely on lz4 shared libraries where relevant
-- ARROW_OPENSSL_USE_SHARED=ON [default=ON]
-- Rely on OpenSSL shared libraries where relevant
-- ARROW_PROTOBUF_USE_SHARED=ON [default=ON]
-- Rely on Protocol Buffers shared libraries where relevant
-- ARROW_THRIFT_USE_SHARED=ON [default=ON]
-- Rely on thrift shared libraries where relevant
-- ARROW_UTF8PROC_USE_SHARED=ON [default=ON]
-- Rely on utf8proc shared libraries where relevant
-- ARROW_SNAPPY_USE_SHARED=ON [default=ON]
-- Rely on snappy shared libraries where relevant
-- ARROW_UTF8PROC_USE_SHARED=ON [default=ON]
-- Rely on utf8proc shared libraries where relevant
-- ARROW_ZSTD_USE_SHARED=ON [default=ON]
-- Rely on zstd shared libraries where relevant
-- ARROW_USE_GLOG=OFF [default=OFF]
-- Build libraries with glog support for pluggable logging
-- ARROW_WITH_BACKTRACE=ON [default=ON]
-- Build with backtrace support
-- ARROW_WITH_BROTLI=OFF [default=OFF]
-- Build with Brotli compression
-- ARROW_WITH_BZ2=OFF [default=OFF]
-- Build with BZ2 compression
-- ARROW_WITH_LZ4=OFF [default=OFF]
-- Build with lz4 compression
-- ARROW_WITH_SNAPPY=OFF [default=OFF]
-- Build with Snappy compression
-- ARROW_WITH_ZLIB=ON [default=OFF]
-- Build with zlib compression
-- ARROW_WITH_ZSTD=OFF [default=OFF]
-- Build with zstd compression
-- ARROW_WITH_UTF8PROC=OFF [default=ON]
-- Build with support for Unicode properties using the utf8proc library
-- (only used if ARROW_COMPUTE is ON)
-- ARROW_WITH_RE2=ON [default=ON]
-- Build with support for regular expressions using the re2 library
-- (only used if ARROW_COMPUTE or ARROW_GANDIVA is ON)
--
-- Parquet options:
--
-- PARQUET_MINIMAL_DEPENDENCY=OFF [default=OFF]
-- Depend only on Thirdparty headers to build libparquet.
-- Always OFF if building binaries
-- PARQUET_BUILD_EXECUTABLES=OFF [default=OFF]
-- Build the Parquet executable CLI tools. Requires static libraries to
be built.
-- PARQUET_BUILD_EXAMPLES=OFF [default=OFF]
-- Build the Parquet examples. Requires static libraries to be built.
-- PARQUET_REQUIRE_ENCRYPTION=OFF [default=OFF]
-- Build support for encryption. Fail if OpenSSL is not found
--
-- Gandiva options:
--
-- ARROW_GANDIVA_JAVA=OFF [default=OFF]
-- Build the Gandiva JNI wrappers
-- ARROW_GANDIVA_STATIC_LIBSTDCPP=OFF [default=OFF]
-- Include -static-libstdc++ -static-libgcc when linking with
-- Gandiva static libraries
-- ARROW_GANDIVA_PC_CXX_FLAGS="" [default=""]
-- Compiler flags to append when pre-compiling Gandiva operations
--
-- Advanced developer options:
--
-- ARROW_EXTRA_ERROR_CONTEXT=OFF [default=OFF]
-- Compile with extra error context (line numbers, code)
-- ARROW_OPTIONAL_INSTALL=OFF [default=OFF]
-- If enabled install ONLY targets that have already been built. Please be
-- advised that if this is enabled 'install' will fail silently on
components
-- that have not been built
-- Outputting build configuration summary to
/tmp/Rtmpz4nE7G/file591d48481e24/cmake_summary.json
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/Rtmpz4nE7G/file591d48481e24
+ /usr/bin/cmake3 --build . --target install
Scanning dependencies of target boost_ep
Scanning dependencies of target jemalloc_ep
[ 2%] Creating directories for 'boost_ep'
[ 2%] Creating directories for 'jemalloc_ep'
[ 3%] Performing download step (verify and extract) for 'boost_ep'
[ 4%] Performing download step (verify and extract) for 'jemalloc_ep'
-- jemalloc_ep download command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-download-*.log
[ 5%] Performing patch step for 'jemalloc_ep'
[ 6%] No update step for 'jemalloc_ep'
[ 7%] Performing configure step for 'jemalloc_ep'
-- boost_ep download command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/boost_ep-prefix/src/boost_ep-stamp/boost_ep-download-*.log
[ 8%] No patch step for 'boost_ep'
[ 8%] No update step for 'boost_ep'
[ 9%] No configure step for 'boost_ep'
[ 10%] No build step for 'boost_ep'
[ 11%] No install step for 'boost_ep'
[ 12%] Completed 'boost_ep'
[ 12%] Built target boost_ep
Scanning dependencies of target rapidjson_ep
[ 13%] Creating directories for 'rapidjson_ep'
[ 13%] Performing download step (verify and extract) for 'rapidjson_ep'
-- rapidjson_ep download command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/src/rapidjson_ep-stamp/rapidjson_ep-download-*.log
[ 14%] No patch step for 'rapidjson_ep'
[ 15%] No update step for 'rapidjson_ep'
[ 16%] Performing configure step for 'rapidjson_ep'
-- rapidjson_ep configure command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/src/rapidjson_ep-stamp/rapidjson_ep-configure-*.log
[ 17%] Performing build step for 'rapidjson_ep'
-- rapidjson_ep build command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/src/rapidjson_ep-stamp/rapidjson_ep-build-*.log
[ 18%] Performing install step for 'rapidjson_ep'
-- rapidjson_ep install command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/src/rapidjson_ep-stamp/rapidjson_ep-install-*.log
[ 19%] Completed 'rapidjson_ep'
[ 19%] Built target rapidjson_ep
Scanning dependencies of target aws_c_common_ep
[ 20%] Creating directories for 'aws_c_common_ep'
[ 21%] Performing download step (verify and extract) for 'aws_c_common_ep'
-- aws_c_common_ep download command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/aws_c_common_ep-prefix/src/aws_c_common_ep-stamp/aws_c_common_ep-download-*.log
[ 22%] No patch step for 'aws_c_common_ep'
[ 23%] No update step for 'aws_c_common_ep'
[ 24%] Performing configure step for 'aws_c_common_ep'
-- aws_c_common_ep configure command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/aws_c_common_ep-prefix/src/aws_c_common_ep-stamp/aws_c_common_ep-configure-*.log
[ 24%] Performing build step for 'aws_c_common_ep'
-- jemalloc_ep configure command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-configure-*.log
[ 24%] Performing build step for 'jemalloc_ep'
-- aws_c_common_ep build command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/aws_c_common_ep-prefix/src/aws_c_common_ep-stamp/aws_c_common_ep-build-*.log
[ 24%] Performing install step for 'aws_c_common_ep'
-- aws_c_common_ep install command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/aws_c_common_ep-prefix/src/aws_c_common_ep-stamp/aws_c_common_ep-install-*.log
[ 25%] Completed 'aws_c_common_ep'
[ 25%] Built target aws_c_common_ep
Scanning dependencies of target aws_checksums_ep
[ 25%] Creating directories for 'aws_checksums_ep'
[ 26%] Performing download step (verify and extract) for 'aws_checksums_ep'
-- aws_checksums_ep download command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-download-*.log
[ 27%] No patch step for 'aws_checksums_ep'
[ 28%] No update step for 'aws_checksums_ep'
[ 29%] Performing configure step for 'aws_checksums_ep'
-- aws_checksums_ep configure command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-configure-*.log
[ 30%] Performing build step for 'aws_checksums_ep'
-- aws_checksums_ep build command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-build-*.log
[ 31%] Performing install step for 'aws_checksums_ep'
-- aws_checksums_ep install command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-install-*.log
[ 32%] Completed 'aws_checksums_ep'
[ 32%] Built target aws_checksums_ep
Scanning dependencies of target zlib_ep
[ 32%] Creating directories for 'zlib_ep'
[ 33%] Performing download step (download, verify and extract) for 'zlib_ep'
-- zlib_ep download command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/zlib_ep-prefix/src/zlib_ep-stamp/zlib_ep-download-*.log
[ 34%] No patch step for 'zlib_ep'
[ 35%] No update step for 'zlib_ep'
[ 36%] Performing configure step for 'zlib_ep'
-- zlib_ep configure command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/zlib_ep-prefix/src/zlib_ep-stamp/zlib_ep-configure-*.log
[ 37%] Performing build step for 'zlib_ep'
-- zlib_ep build command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/zlib_ep-prefix/src/zlib_ep-stamp/zlib_ep-build-*.log
[ 38%] Performing install step for 'zlib_ep'
-- zlib_ep install command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/zlib_ep-prefix/src/zlib_ep-stamp/zlib_ep-install-*.log
[ 39%] Completed 'zlib_ep'
[ 39%] Built target zlib_ep
Scanning dependencies of target re2_ep
[ 40%] Creating directories for 're2_ep'
[ 41%] Performing download step (verify and extract) for 're2_ep'
-- re2_ep download command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/re2_ep-prefix/src/re2_ep-stamp/re2_ep-download-*.log
[ 42%] No patch step for 're2_ep'
[ 43%] No update step for 're2_ep'
[ 43%] Performing configure step for 're2_ep'
-- re2_ep configure command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/re2_ep-prefix/src/re2_ep-stamp/re2_ep-configure-*.log
[ 44%] Performing build step for 're2_ep'
-- jemalloc_ep build command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-build-*.log
[ 44%] Performing install step for 'jemalloc_ep'
-- jemalloc_ep install command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-install-*.log
[ 45%] Completed 'jemalloc_ep'
[ 45%] Built target jemalloc_ep
Scanning dependencies of target arrow_dataset_objlib
[ 46%] Building CXX object
src/arrow/dataset/CMakeFiles/arrow_dataset_objlib.dir/Unity/unity_1_cxx.cxx.o
[ 47%] Building CXX object
src/arrow/dataset/CMakeFiles/arrow_dataset_objlib.dir/Unity/unity_0_cxx.cxx.o
-- re2_ep build command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/re2_ep-prefix/src/re2_ep-stamp/re2_ep-build-*.log
[ 48%] Performing install step for 're2_ep'
-- re2_ep install command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/re2_ep-prefix/src/re2_ep-stamp/re2_ep-install-*.log
[ 48%] Completed 're2_ep'
[ 48%] Built target re2_ep
Scanning dependencies of target thrift_ep
[ 49%] Creating directories for 'thrift_ep'
[ 50%] Performing download step (verify and extract) for 'thrift_ep'
-- thrift_ep download command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-download-*.log
[ 51%] No patch step for 'thrift_ep'
[ 51%] No update step for 'thrift_ep'
[ 52%] Performing configure step for 'thrift_ep'
-- thrift_ep configure command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-configure-*.log
[ 53%] Performing build step for 'thrift_ep'
[ 53%] Built target arrow_dataset_objlib
Scanning dependencies of target aws_c_event_stream_ep
[ 54%] Creating directories for 'aws_c_event_stream_ep'
[ 55%] Performing download step (verify and extract) for 'aws_c_event_stream_ep'
-- aws_c_event_stream_ep download command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/aws_c_event_stream_ep-prefix/src/aws_c_event_stream_ep-stamp/aws_c_event_stream_ep-download-*.log
[ 55%] No patch step for 'aws_c_event_stream_ep'
[ 56%] No update step for 'aws_c_event_stream_ep'
[ 57%] Performing configure step for 'aws_c_event_stream_ep'
-- aws_c_event_stream_ep configure command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/aws_c_event_stream_ep-prefix/src/aws_c_event_stream_ep-stamp/aws_c_event_stream_ep-configure-*.log
[ 58%] Performing build step for 'aws_c_event_stream_ep'
-- aws_c_event_stream_ep build command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/aws_c_event_stream_ep-prefix/src/aws_c_event_stream_ep-stamp/aws_c_event_stream_ep-build-*.log
[ 59%] Performing install step for 'aws_c_event_stream_ep'
-- aws_c_event_stream_ep install command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/aws_c_event_stream_ep-prefix/src/aws_c_event_stream_ep-stamp/aws_c_event_stream_ep-install-*.log
[ 60%] Completed 'aws_c_event_stream_ep'
[ 60%] Built target aws_c_event_stream_ep
Scanning dependencies of target awssdk_ep
[ 61%] Creating directories for 'awssdk_ep'
[ 62%] Performing download step (verify and extract) for 'awssdk_ep'
-- awssdk_ep download command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/awssdk_ep-prefix/src/awssdk_ep-stamp/awssdk_ep-download-*.log
[ 63%] No patch step for 'awssdk_ep'
[ 64%] No update step for 'awssdk_ep'
[ 64%] Performing configure step for 'awssdk_ep'
-- awssdk_ep configure command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/awssdk_ep-prefix/src/awssdk_ep-stamp/awssdk_ep-configure-*.log
[ 65%] Performing build step for 'awssdk_ep'
-- thrift_ep build command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-build-*.log
[ 66%] Performing install step for 'thrift_ep'
-- thrift_ep install command succeeded. See also
/tmp/Rtmpz4nE7G/file591d48481e24/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-install-*.log
[ 67%] Completed 'thrift_ep'
[ 67%] Built target thrift_ep
CMake Error at
/tmp/Rtmpz4nE7G/file591d48481e24/awssdk_ep-prefix/src/awssdk_ep-stamp/awssdk_ep-build-RELEASE.cmake:37
(message):
Command failed: 2 'make' See also
/tmp/Rtmpz4nE7G/file591d48481e24/awssdk_ep-prefix/src/awssdk_ep-stamp/awssdk_ep-build-*.log
-- stdout output is:
Scanning dependencies of target aws-cpp-sdk-core
[ 2%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/ub_core.cpp.o
[ 4%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/external/cjson/cJSON.cpp.o
[ 6%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/http/HttpClient.cpp.o
[ 8%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/http/HttpClientFactory.cpp.o
[ 10%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/http/HttpRequest.cpp.o
[ 12%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/http/HttpTypes.cpp.o
[ 14%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/http/Scheme.cpp.o
[ 16%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/http/URI.cpp.o
[ 18%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/http/curl/CurlHandleContainer.cpp.o
[ 20%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/http/curl/CurlHttpClient.cpp.o
[ 22%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/net/linux-shared/Net.cpp.o
[ 25%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/net/linux-shared/SimpleUDP.cpp.o
[ 27%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/utils/Array.cpp.o
[ 29%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/utils/DNS.cpp.o
[ 31%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/utils/DateTimeCommon.cpp.o
[ 33%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/utils/Directory.cpp.o
[ 35%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/utils/EnumParseOverflowContainer.cpp.o
[ 37%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/utils/FileSystemUtils.cpp.o
[ 39%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/utils/GetTheLights.cpp.o
[ 41%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/utils/HashingUtils.cpp.o
[ 43%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/utils/StringUtils.cpp.o
[ 45%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/utils/TempFile.cpp.o
[ 47%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/utils/UUID.cpp.o
[ 50%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/utils/crypto/factory/Factories.cpp.o
[ 52%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/utils/event/EventDecoderStream.cpp.o
[ 54%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/utils/event/EventEncoderStream.cpp.o
[ 56%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/utils/event/EventHeader.cpp.o
[ 58%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/utils/event/EventMessage.cpp.o
[ 60%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/utils/event/EventStreamBuf.cpp.o
[ 62%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/utils/event/EventStreamDecoder.cpp.o
[ 64%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/utils/event/EventStreamEncoder.cpp.o
[ 66%] Building CXX object
aws-cpp-sdk-core/CMakeFiles/aws-cpp-sdk-core.dir/source/utils/event/EventStreamErrors.cpp.o
[ 68%] Linking CXX static library libaws-cpp-sdk-core.a
[ 68%] Built target aws-cpp-sdk-core
Scanning dependencies of target aws-cpp-sdk-config
[ 70%] Building CXX object
aws-cpp-sdk-config/CMakeFiles/aws-cpp-sdk-config.dir/ub_CONFIG.cpp.o
Scanning dependencies of target aws-cpp-sdk-s3
[ 72%] Building CXX object
aws-cpp-sdk-s3/CMakeFiles/aws-cpp-sdk-s3.dir/ub_S3.cpp.o
[ 75%] Linking CXX static library libaws-cpp-sdk-config.a
[ 75%] Built target aws-cpp-sdk-config-- stderr output is:
g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
make[5]: *** [aws-cpp-sdk-s3/CMakeFiles/aws-cpp-sdk-s3.dir/build.make:84:
aws-cpp-sdk-s3/CMakeFiles/aws-cpp-sdk-s3.dir/ub_S3.cpp.o] Error 1
make[4]: *** [CMakeFiles/Makefile2:295:
aws-cpp-sdk-s3/CMakeFiles/aws-cpp-sdk-s3.dir/all] Error 2
make[4]: *** Waiting for unfinished jobs....
make[3]: *** [Makefile:150: all] Error 2CMake Error at
/tmp/Rtmpz4nE7G/file591d48481e24/awssdk_ep-prefix/src/awssdk_ep-stamp/awssdk_ep-build-RELEASE.cmake:47
(message):
Stopping after outputting logs.
make[2]: *** [CMakeFiles/awssdk_ep.dir/build.make:134:
awssdk_ep-prefix/src/awssdk_ep-stamp/awssdk_ep-build] Error 1
make[1]: *** [CMakeFiles/Makefile2:1048: CMakeFiles/awssdk_ep.dir/all] Error 2
gmake: *** [Makefile:161: all] Error 2
+ popd
/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow
PKG_CFLAGS=-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW
PKG_LIBS=-larrow_dataset -lparquet -larrow
** libs
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c array.cpp -o array.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c array_from_vector.cpp -o
array_from_vector.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c array_to_vector.cpp -o
array_to_vector.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c arraydata.cpp -o arraydata.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c arrowExports.cpp -o
arrowExports.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c buffer.cpp -o buffer.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c chunkedarray.cpp -o
chunkedarray.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c compression.cpp -o compression.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c compute.cpp -o compute.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c csv.cpp -o csv.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c dataset.cpp -o dataset.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c datatype.cpp -o datatype.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c expression.cpp -o expression.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c feather.cpp -o feather.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c field.cpp -o field.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c filesystem.cpp -o filesystem.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c imports.cpp -o imports.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c io.cpp -o io.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c json.cpp -o json.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c memorypool.cpp -o memorypool.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c message.cpp -o message.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c parquet.cpp -o parquet.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c py-to-r.cpp -o py-to-r.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c recordbatch.cpp -o recordbatch.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c recordbatchreader.cpp -o
recordbatchreader.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c recordbatchwriter.cpp -o
recordbatchwriter.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c scalar.cpp -o scalar.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c schema.cpp -o schema.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c symbols.cpp -o symbols.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c table.cpp -o table.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I/tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/libarrow/arrow-3.0.0/include
-DARROW_R_WITH_ARROW -I"/usr/lib64/R/library/cpp11/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c threadpool.cpp -o threadpool.o
g++ -m64 -std=gnu++11 -shared -L/usr/lib64/R/lib -Wl,-z,relro -o arrow.so
array.o array_from_vector.o array_to_vector.o arraydata.o arrowExports.o
buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o
expression.o feather.o field.o filesystem.o imports.o io.o json.o memorypool.o
message.o parquet.o py-to-r.o recordbatch.o recordbatchreader.o
recordbatchwriter.o scalar.o schema.o symbols.o table.o threadpool.o
-larrow_dataset -lparquet -larrow -L/usr/lib64/R/lib -lR
installing to /usr/lib64/R/library/00LOCK-arrow/00new/arrow/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
Warning in file.copy(file.path(R.home("doc"), "html", "R.css"), outman) :
problem copying /usr/share/doc/R-3.6.0/html/R.css to
/usr/lib64/R/library/00LOCK-arrow/00new/arrow/html/R.css: No such file or
directory
converting help for package ‘arrow’
finding HTML links ... done
ArrayData html
ChunkedArray html
Codec html
CsvReadOptions html
CsvTableReader html
DataType html
Dataset html
DictionaryType html
Expression html
FeatherReader html
Field html
FileFormat html
FileInfo html
FileSelector html
FileSystem html
FileWriteOptions html
FixedWidthType html
InputStream html
MemoryPool html
Message html
MessageReader html
OutputStream html
ParquetArrowReaderProperties html
ParquetFileReader html
ParquetFileWriter html
ParquetWriterProperties html
Partitioning html
RecordBatch html
RecordBatchReader html
RecordBatchWriter html
Scalar html
Scanner html
Schema html
Table html
array html
arrow-package html
arrow_available html
arrow_info html
buffer html
cast_options html
codec_is_available html
compression html
copy_files html
cpu_count html
data-type html
dataset_factory html
default_memory_pool html
dictionary html
enums html
flight_connect html
flight_get html
flight_put html
hive_partition html
install_arrow html
install_pyarrow html
list_flights html
load_flight_server html
make_readable_file html
map_batches html
match_arrow html
mmap_create html
mmap_open html
open_dataset html
read_delim_arrow html
read_feather html
read_ipc_stream html
read_json_arrow html
read_message html
read_parquet html
read_schema html
reexports html
Rd warning: /tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/man/reexports.Rd:26:
file link ‘starts_with’ in package ‘tidyselect’ does not exist and so has been
treated as a topic
Rd warning: /tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/man/reexports.Rd:26:
file link ‘everything’ in package ‘tidyselect’ does not exist and so has been
treated as a topic
Rd warning: /tmp/RtmpFGGUfi/R.INSTALL590815733f98/arrow/man/reexports.Rd:26:
file link ‘one_of’ in package ‘tidyselect’ does not exist and so has been
treated as a topic
s3_bucket html
type html
unify_schemas html
write_dataset html
write_feather html
write_ipc_stream html
write_parquet html
write_to_raw html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (arrow)
Warning in file.create(f.tg) :
cannot create file '/usr/share/doc/R-3.6.0/html/packages.html', reason 'No
such file or directory'
Warning in utils::make.packages.html(.Library, docdir = R.home("doc")) :
cannot update HTML package index
[root@ea90f76f63be app]# cat
/tmp/Rtmpz4nE7G/file591d48481e24/awssdk_ep-prefix/src/awssdk_ep-stamp/awssdk_ep-build-RELEASE.cmake
cat:
/tmp/Rtmpz4nE7G/file591d48481e24/awssdk_ep-prefix/src/awssdk_ep-stamp/awssdk_ep-build-RELEASE.cmake:
No such file or directory
[root@ea90f76f63be app]#{code}
> [R] NotImplemented: Got S3 URI but Arrow compiled without S3 support
> --------------------------------------------------------------------
>
> Key: ARROW-12026
> URL: https://issues.apache.org/jira/browse/ARROW-12026
> Project: Apache Arrow
> Issue Type: Bug
> Components: R
> Affects Versions: 3.0.0
> Environment: QA
> Reporter: Karthikeyan Janakiraman
> Priority: Trivial
>
> I have followed below steps however seeing the error on summary when I try to
> read parquet from S3.
>
> 1. export LIBARROW_MINIMAL=false
> {code:java}
> [root@c1cce557dba3 tmp]# printenv | grep LIBARROW_MINIMAL
> LIBARROW_MINIMAL=false{code}
>
> 2. Install arrow
> {code:java}
> R CMD INSTALL arrow_3.0.0.tar.gz
> {code}
>
> 3. Get into R prompt and load arrow
> {code:java}
> > library('arrow')
> Attaching package: ‘arrow’The following object is masked from
> ‘package:utils’: timestamp
> >
> {code}
> 4. When I try to read a parquet from S3 bucket seeing below error,
>
> {code:java}
> > df <- read_parquet("s3://my_bucket/test-parquet/refinement.parquet")
> Error: NotImplemented: Got S3 URI but Arrow compiled without S3 support
> {code}
>
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