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https://issues.apache.org/jira/browse/ARROW-12860?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Nic Crane resolved ARROW-12860.
-------------------------------
Resolution: Resolved
> [R] Error when installing R package on Raspbian
> -----------------------------------------------
>
> Key: ARROW-12860
> URL: https://issues.apache.org/jira/browse/ARROW-12860
> Project: Apache Arrow
> Issue Type: Bug
> Components: R
> Reporter: Nic Crane
> Priority: Minor
>
> Posting this on behalf of a friend who has a slight allergy to Jira - he's
> installed the R package via install.packages, but is getting the following
> error:
> {code:java}
> * installing *source* package 'arrow' ...
> ** package 'arrow' successfully unpacked and MD5 sums checked
> ** using staged installation
> *** Successfully retrieved C++ source
> *** Building C++ libraries
> **** arrow
> PKG_CFLAGS=-I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> PKG_LIBS=-L/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/lib
> -larrow_dataset -lparquet -larrow -larrow -larrow_bundled_dependencies
> -larrow_dataset -lparquet
> ** libs
> make[1]: Entering directory '/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/src'
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> array.cpp -o array.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> array_to_vector.cpp -o array_to_vector.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> arraydata.cpp -o arraydata.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> arrowExports.cpp -o arrowExports.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> buffer.cpp -o buffer.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> chunkedarray.cpp -o chunkedarray.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> compression.cpp -o compression.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> compute.cpp -o compute.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> csv.cpp -o csv.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> dataset.cpp -o dataset.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> datatype.cpp -o datatype.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> expression.cpp -o expression.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> feather.cpp -o feather.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> field.cpp -o field.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> filesystem.cpp -o filesystem.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> imports.cpp -o imports.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> io.cpp -o io.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> json.cpp -o json.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> memorypool.cpp -o memorypool.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> message.cpp -o message.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> parquet.cpp -o parquet.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> py-to-r.cpp -o py-to-r.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> r_to_arrow.cpp -o r_to_arrow.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> recordbatch.cpp -o recordbatch.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> recordbatchreader.cpp -o recordbatchreader.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> recordbatchwriter.cpp -o recordbatchwriter.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> runtimeinfo.cpp -o runtimeinfo.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> scalar.cpp -o scalar.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> schema.cpp -o schema.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> symbols.cpp -o symbols.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> table.cpp -o table.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> threadpool.cpp -o threadpool.o
> g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG
> -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c
> type_infer.cpp -o type_infer.o
> g++ -std=gnu++11 -shared -L/opt/R/release/lib/R/lib -L/usr/local/lib -o
> arrow.so array.o array_to_vector.o arraydata.o arrowExports.o buffer.o
> chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o
> expression.o feather.o field.o filesystem.o imports.o io.o json.o
> memorypool.o message.o parquet.o py-to-r.o r_to_arrow.o recordbatch.o
> recordbatchreader.o recordbatchwriter.o runtimeinfo.o scalar.o schema.o
> symbols.o table.o threadpool.o type_infer.o
> -L/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/lib
> -larrow_dataset -lparquet -larrow -larrow -larrow_bundled_dependencies
> -larrow_dataset -lparquet -L/opt/R/release/lib/R/lib -lR
> make[1]: Leaving directory '/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/src'
> installing to /home/mds/R/r4pi/00LOCK-arrow/00new/arrow/libs
> ** R
> ** inst
> ** byte-compile and prepare package for lazy loading
> ** help
> *** installing help indices
> ** building package indices
> ** installing vignettes
> ** testing if installed package can be loaded from temporary location
> Error: package or namespace load failed for 'arrow' in dyn.load(file, DLLpath
> = DLLpath, ...):
> unable to load shared object
> '/home/mds/R/r4pi/00LOCK-arrow/00new/arrow/libs/arrow.so':
> /home/mds/R/r4pi/00LOCK-arrow/00new/arrow/libs/arrow.so: undefined symbol:
> __atomic_fetch_add_8
> Error: loading failed
> Execution halted
> ERROR: loading failed
> * removing '/home/mds/R/r4pi/arrow'
> Error: Build of package failed
> {code}
>
> {code:java}
> > sessionInfo()
> R version 4.1.0 (2021-05-18)
> Platform: armv7l-unknown-linux-gnueabihf (32-bit)
> Running under: Raspbian GNU/Linux 10 (buster)Matrix products: default
> BLAS/LAPACK: /usr/lib/arm-linux-gnueabihf/libopenblas_armv6p-r0.3.5.solocale:
> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
> [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
> [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
> [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
> [9] LC_ADDRESS=C LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages:
> [1] stats graphics grDevices utils datasets methods base loaded via a
> namespace (and not attached):
> [1] compiler_4.1.0
> {code}
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