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https://issues.apache.org/jira/browse/ARROW-14555?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17437391#comment-17437391
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Jonathan Keane commented on ARROW-14555:
----------------------------------------
Thanks for that info, that's super helpful. What resources does your container
have access to? That error looks like the compilation process is being killed
before it is complete and looks like errors I've seen when the container runs
out of memory while compiling.
> install.packages("arrow") fails on docker image rocker/r-ver:4.0.2
> ------------------------------------------------------------------
>
> Key: ARROW-14555
> URL: https://issues.apache.org/jira/browse/ARROW-14555
> Project: Apache Arrow
> Issue Type: Bug
> Components: R
> Affects Versions: 6.0.0
> Reporter: Daniel Teske
> Priority: Major
> Attachments: complete-arrow_r_dev-output.log, complete-output.log
>
>
> Since last week we cannot build our R environment because the the arrow lib
> fails on
> {code:java}
> install.packages("arrow"){code}
> We're using rocker/r-vers:4.0.2 as our base image. It seems that it's
> possible to install arrow on Windows an Mac, but not on Linux.
> The effected part of the Dockerfile is the following:
> {code:java}
> FROM rocker/r-ver:4.0.2 AS builder
> RUN apt-get update && apt-get install -y \
> git-core \
> libcurl4-openssl-dev \
> libgit2-dev \
> libglpk-dev \
> libgmp-dev \
> libicu-dev \
> libssh2-1-dev \
> libssl-dev \
> libxml2-dev \
> make pandoc pandoc-citeproc zlib1g-dev && rm -rf /var/lib/apt/lists/*
> RUN echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'),
> download.file.method = 'libcurl')" >> /usr/local/lib/R/etc/Rprofile.site
> RUN R -e 'install.packages("remotes")'
> RUN R -e 'remotes::install_github("r-lib/remotes", ref = "97bbf81")'
> # copy the setup script, run it, then delete it
> COPY dependencies/setup.R /
> RUN Rscript setup.R && rm setup.R
> {code}
> the dependencies/setup.R script contains
> {code:java}
> install.packages(
> c(
> "arrow"
> ),
> quiet = FALSE,
> verbose = TRUE
> )
> arrow::install_arrow()
> {code}
> I attached the complete log output, but the interesting part ist the
> following:
> {code:java}
> #12 55.88 * installing *source* package ‘arrow’ ...
> #12 55.96 ** package ‘arrow’ successfully unpacked and MD5 sums checked
> #12 55.96 ** using staged installation
> #12 56.46 *** Found local C++ source: 'tools/cpp'
> #12 56.46 *** Building C++ libraries
> #12 56.53 **** cmake
> #12 62.22 **** arrow
> #12 663.6 **** Error building Arrow C++. Re-run with ARROW_R_DEV=true for
> debug information.
> #12 665.3 ------------------------- NOTE ---------------------------
> #12 665.3 There was an issue preparing the Arrow C++ libraries.
> #12 665.3 See https://arrow.apache.org/docs/r/articles/install.html
> #12 665.3 ---------------------------------------------------------
> #12 665.5 ERROR: configuration failed for package ‘arrow’
> #12 665.5 * removing ‘/usr/local/lib/R/site-library/arrow’
> #12 666.0
> #12 666.0 The downloaded source packages are in
> #12 666.0 ‘/tmp/RtmpDWxSqL/downloaded_packages’
> #12 666.0 Warning message:
> #12 666.0 In install.packages(c("arrow"), quiet = FALSE, verbose = TRUE) :
> #12 666.0 installation of package ‘arrow’ had non-zero exit status
> #12 666.1 Error in loadNamespace(name) : there is no package called ‘arrow’
> #12 666.1 Calls: :: ... loadNamespace -> withRestarts -> withOneRestart ->
> doWithOneRestart
> #12 666.1 Execution halted
> ------
> executor failed running [/bin/sh -c Rscript setup.R && rm setup.R]: exit
> code: 1
> {code}
>
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