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https://issues.apache.org/jira/browse/ARROW-14526?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17438314#comment-17438314
]
Naman commented on ARROW-14526:
-------------------------------
run:
{code:java}
Starting program: somewhere/miniconda3/envs/testpyarrow/bin/python -c import\
pandas
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
Missing separate debuginfo for
somewhere/miniconda3/envs/testpyarrow/lib/python3.8/site-packages/mkl/../../../libiomp5.so
Try: yum --enablerepo='*debug*' install
/usr/lib/debug/.build-id/47/5ceda1e8d10732daed7c831a3e2568c761e6d5.debug
[Detaching after fork from child process 9140]
Program received signal SIGILL, Illegal instruction.
0x00007fffe08f1aeb in
arrow::compute::ArraySortOptions::ArraySortOptions(arrow::compute::SortOrder,
arrow::compute::NullPlacement) ()
from
somewhere/miniconda3/envs/testpyarrow/lib/python3.8/site-packages/pyarrow/libarrow.so.600
Missing separate debuginfos, use: debuginfo-install glibc-2.17-325.el7_9.x86_64
{code}
disassemble:
{code:java}
Dump of assembler code for function
_ZN5arrow7compute16ArraySortOptionsC2ENS0_9SortOrderENS0_13NullPlacementE:
0x00007fffe08f1ae0 <+0>: mov 0x11e3e09(%rip),%rax # 0x7fffe1ad58f0
<_ZN5arrow7compute8internal12_GLOBAL__N_1L21kArraySortOptionsTypeE>
0x00007fffe08f1ae7 <+7>: movd %esi,%xmm0
=> 0x00007fffe08f1aeb <+11>: pinsrd $0x1,%edx,%xmm0
0x00007fffe08f1af1 <+17>: mov %rax,0x8(%rdi)
0x00007fffe08f1af5 <+21>: mov 0x11c9034(%rip),%rax # 0x7fffe1abab30
0x00007fffe08f1afc <+28>: movq %xmm0,0x10(%rdi)
0x00007fffe08f1b01 <+33>: add $0x10,%rax
0x00007fffe08f1b05 <+37>: mov %rax,(%rdi)
0x00007fffe08f1b08 <+40>: retq
End of assembler dump.{code}
Does this help?
> installing pyarrow breaks the conda environment
> -----------------------------------------------
>
> Key: ARROW-14526
> URL: https://issues.apache.org/jira/browse/ARROW-14526
> Project: Apache Arrow
> Issue Type: Bug
> Components: Python
> Environment: Conda version: conda 4.10.3
> The issue occurs on RedHat Linux Server running on AMD Opteron Processor
> 4180. (Works with intel processor)
> Reporter: Naman
> Priority: Blocker
> Labels: pyarrow
>
> I am working with pyarrow for parquet and feather IO. My environment has the
> following requirements python=3.8, pandas, geopandas, pyarrow, matplotlib,
> seaborn, jupyter
> You can reproduce the env using
> {code:java}
> $ conda create -n testpyarrow python=3.8 pandas geopandas matplotlib seaborn
> jupyter notebook pyarrow
> $ conda activate testpyarrow{code}
> _you can skip pyarrow in the above command and then install it separately
> from conda-forge as instructed in the pyarrow github (*doesn't make a
> difference*) page using_
> {code:java}
> $ conda install -c conda-forge pyarrow{code}
> After the env is created and activated, opening a python terminal and try
> importing to import anything
> {code:java}
> $ python
> >>>import pandas{code}
> yields
> {code:java}
> Illegal instruction (core dumped){code}
> If you uninstall pyarrow, all the imports start working. So I have zeroed
> down that pyarrow is breaking the imports.
> As it is core dumped I can't trace the issue further. Illegal instruction is
> raised irrespective of the library I try to import (i.e. seaborn,
> matplotlib, geopandas, pandas, etc)
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