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https://issues.apache.org/jira/browse/ARROW-17374?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17605546#comment-17605546
]
Vincent Nijs commented on ARROW-17374:
--------------------------------------
The code below works fine on x86_64 but fails with the errors below on aarch64
{{cp -a /usr/local/lib/R/etc/Makeconf /usr/local/lib/R/etc/Makeconf.bak;}}
{{sed -i 's/fpic/fPIC/g' /usr/local/lib/R/etc/Makeconf;}}
{{R -e "options(HTTPUserAgent = sprintf('R/%s R (%s)', getRversion(),
paste(getRversion(), R.version['platform'], R.version['arch'],
R.version['os']))); Sys.setenv('ARROW_R_DEV' = TRUE); install.packages('arrow',
repos = 'https://cran.r-project.org', type='source', Ncpus=-1)"}}
{{mv /usr/local/lib/R/etc/Makeconf.bak /usr/local/lib/R/etc/Makeconf;}}
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘arrow’ in dyn.load(file, DLLpath =
DLLpath, ...):
unable to load shared object
'/usr/local/lib/R/site-library/00LOCK-arrow/00new/arrow/libs/arrow.so':
/usr/local/lib/R/site-library/00LOCK-arrow/00new/arrow/libs/arrow.so:
undefined symbol: _ZTIN6apache6thrift8protocol9TProtocolE
Error: loading failed
Execution halted
ERROR: loading failed
* removing '/usr/local/lib/R/site-library/arrow'
The downloaded source packages are in
'/tmp/RtmpnU3zrU/downloaded_packages'
Warning message:
In install.packages("arrow", repos = "https://cran.r-project.org";, :
installation of package 'arrow' had non-zero exit status
> [R] R Arrow install fails with SNAPPY_LIB-NOTFOUND
> --------------------------------------------------
>
> Key: ARROW-17374
> URL: https://issues.apache.org/jira/browse/ARROW-17374
> Project: Apache Arrow
> Issue Type: Bug
> Components: R
> Affects Versions: 8.0.0, 9.0.0, 8.0.1
> Environment: Amazon Linux 2 (RHEL) - 5.10.102-99.473.amzn2.x86_64
> Reporter: Shane Brennan
> Priority: Blocker
> Attachments: build-images.out
>
>
> I've been trying to install Arrow on an R notebook within AWS SageMaker.
> SageMaker provides Jupyter-like notebooks, with each instance running Amazon
> Linux 2 as its OS, itself based on RHEL.
> Trying to install a few ways, e.g., using the standard binaries, using the
> nightly builds, setting ARROW_WITH_SNAPPY to ON and LIBARROW_MINIMAL all
> still result in the following error.
> {noformat}
> x86_64-conda-linux-gnu-c++ -std=gnu++11 -shared
> -L/home/ec2-user/anaconda3/envs/R/lib/R/lib -Wl,-O2 -Wl,--sort-common
> -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags
> -Wl,--gc-sections -Wl,--allow-shlib-undefined
> -Wl,-rpath,/home/ec2-user/anaconda3/envs/R/lib
> -Wl,-rpath-link,/home/ec2-user/anaconda3/envs/R/lib
> -L/home/ec2-user/anaconda3/envs/R/lib -o arrow.so RTasks.o altrep.o array.o
> array_to_vector.o arraydata.o arrowExports.o bridge.o buffer.o chunkedarray.o
> compression.o compute-exec.o compute.o config.o csv.o dataset.o datatype.o
> expression.o extension-impl.o feather.o field.o filesystem.o imports.o io.o
> json.o memorypool.o message.o parquet.o r_to_arrow.o recordbatch.o
> recordbatchreader.o recordbatchwriter.o safe-call-into-r-impl.o scalar.o
> schema.o symbols.o table.o threadpool.o type_infer.o
> -L/tmp/Rtmpuh87oc/R.INSTALL67114493a3de/arrow/libarrow/arrow-9.0.0.20220809/lib
> -larrow_dataset -lparquet -larrow -larrow_bundled_dependencies -lz
> SNAPPY_LIB-NOTFOUND /home/ec2-user/anaconda3/envs/R/lib/libbz2.so -pthread
> -larrow -larrow_bundled_dependencies -larrow_dataset -lparquet -lssl -lcrypto
> -lcurl -lssl -lcrypto -lcurl -L/home/ec2-user/anaconda3/envs/R/lib/R/lib -lR
> x86_64-conda-linux-gnu-c++: error: SNAPPY_LIB-NOTFOUND: No such file or
> directory
> make: *** [/home/ec2-user/anaconda3/envs/R/lib/R/share/make/shlib.mk:10:
> arrow.so] Error 1{noformat}
> Snappy is installed on the systems, and both shared object (.so) and cmake
> files are there, where I've tried setting the system env variables Snappy_DIR
> and Snappy_LIB to point at them, but to no avail.
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