Revision: 5155
Author: hansonr
Date: 2006-05-21 21:31:05 -0700 (Sun, 21 May 2006)
ViewCVS: http://svn.sourceforge.net/jmol/?rev=5155&view=rev
Log Message:
-----------
bob200603 10.x.05 isosurface data dump to System.out -- preliminary only
Modified Paths:
--------------
branches/bob200603/Jmol/src/org/jmol/viewer/Isosurface.java
Modified: branches/bob200603/Jmol/src/org/jmol/viewer/Isosurface.java
===================================================================
--- branches/bob200603/Jmol/src/org/jmol/viewer/Isosurface.java 2006-05-21
16:42:36 UTC (rev 5154)
+++ branches/bob200603/Jmol/src/org/jmol/viewer/Isosurface.java 2006-05-22
04:31:05 UTC (rev 5155)
@@ -286,10 +286,16 @@
return (negativeAtomCount ? parseInt(br.readLine()) : 1);
}
+ boolean collectData = true;
void readVoxelData(BufferedReader br) throws Exception {
System.out.println("entering readVoxelData for fileIndex = " + fileIndex);
String line = "";
ichNextParse = 0;
+ boolean inside = false;
+ int dataCount = 0;
+ String data = "";
+ int nBytes = 0;
+ int nDataPoints = 1;
int voxelCountX = voxelCounts[0];
int voxelCountY = voxelCounts[1];
int voxelCountZ = voxelCounts[2];
@@ -309,14 +315,31 @@
System.out.println("end of file in CubeReader?");
throw new NullPointerException();
}
+ nBytes += line.length() + 1;
}
strip[z] = voxelValue;
+ if (collectData) {
+ boolean isInside = ((cutoff > 0 && voxelValue >= cutoff) ||
+ (cutoff < 0 && voxelValue <= cutoff));
+ if (inside == isInside) {
+ dataCount++;
+ } else {
+ data += " " + dataCount;
+ ++nDataPoints;
+ dataCount = 1;
+ inside = !inside;
+ }
+ }
}
}
}
- System.out.println("Successfully read " + voxelCountX +
- " x " + voxelCountY +
- " x " + voxelCountZ + " voxels");
+ if (collectData) {
+ data += " " + dataCount;
+ System.out.println("cutoff " + cutoff + " bytes " + data.length()
+ + " compressionRatio " + (nBytes * 1f / data.length()) + "\n" +
nDataPoints + data);
+ }
+ System.out.println("Successfully read " + voxelCountX + " x " + voxelCountY
+ + " x " + voxelCountZ + " voxels");
}
void skipData(BufferedReader br, int n) throws Exception {
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