Revision: 18234
http://sourceforge.net/p/jmol/code/18234
Author: hansonr
Date: 2013-05-20 12:48:59 +0000 (Mon, 20 May 2013)
Log Message:
-----------
___version=13.0.16_dev_2013.05.20a
bug fix: rockets not working for alpha polymer
bug fix: GXL added to carbohydrates
Modified Paths:
--------------
trunk/Jmol/src/org/jmol/renderbio/RocketsRenderer.java
trunk/Jmol/src/org/jmol/viewer/JC.java
trunk/Jmol/src/org/jmol/viewer/Jmol.properties
Modified: trunk/Jmol/src/org/jmol/renderbio/RocketsRenderer.java
===================================================================
--- trunk/Jmol/src/org/jmol/renderbio/RocketsRenderer.java 2013-05-20
12:48:37 UTC (rev 18233)
+++ trunk/Jmol/src/org/jmol/renderbio/RocketsRenderer.java 2013-05-20
12:48:59 UTC (rev 18234)
@@ -25,7 +25,7 @@
package org.jmol.renderbio;
import org.jmol.constant.EnumStructure;
-import org.jmol.modelsetbio.AminoPolymer;
+import org.jmol.modelsetbio.AlphaPolymer;
import org.jmol.modelsetbio.Helix;
import org.jmol.modelsetbio.Monomer;
import org.jmol.modelsetbio.ProteinStructure;
@@ -46,7 +46,7 @@
@Override
protected void renderBioShape(BioShape bioShape) {
- if (!(bioShape.bioPolymer instanceof AminoPolymer))
+ if (!(bioShape.bioPolymer instanceof AlphaPolymer))
return;
boolean val = !viewer.getBoolean(T.rocketbarrels);
if (renderArrowHeads != val) {
Modified: trunk/Jmol/src/org/jmol/viewer/JC.java
===================================================================
--- trunk/Jmol/src/org/jmol/viewer/JC.java 2013-05-20 12:48:37 UTC (rev
18233)
+++ trunk/Jmol/src/org/jmol/viewer/JC.java 2013-05-20 12:48:59 UTC (rev
18234)
@@ -1071,9 +1071,10 @@
// this form is used for counting groups in ModelSet
+ // GLX added for 13.1.16
private final static String allCarbohydrates =
",[AHR],[ALL],[AMU],[ARA],[ARB],[BDF],[BDR],[BGC],[BMA]" +
- ",[FCA],[FCB],[FRU],[FUC],[FUL],[GAL],[GLA],[GLC]" +
+ ",[FCA],[FCB],[FRU],[FUC],[FUL],[GAL],[GLA],[GLC],[GXL]" +
",[GUP],[LXC],[MAN],[RAM],[RIB],[RIP],[XYP],[XYS]" +
",[CBI],[CT3],[CTR],[CTT],[LAT],[MAB],[MAL],[MLR],[MTT]" +
",[SUC],[TRE],[GCU],[MTL],[NAG],[NDG],[RHA],[SOR],[SOL],[SOE]" +
Modified: trunk/Jmol/src/org/jmol/viewer/Jmol.properties
===================================================================
--- trunk/Jmol/src/org/jmol/viewer/Jmol.properties 2013-05-20 12:48:37 UTC
(rev 18233)
+++ trunk/Jmol/src/org/jmol/viewer/Jmol.properties 2013-05-20 12:48:59 UTC
(rev 18234)
@@ -11,6 +11,9 @@
___JmolVersion="13.1.16_dev_2013.05.20a"
+bug fix: rockets not working for alpha polymer (also in 13.0.16)
+bug fix: GXL added to carbohydrates
+
popup: added menu for MEP range -0.1 0.1
new feature: cache CLEAR
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