Revision: 18345
http://sourceforge.net/p/jmol/code/18345
Author: hansonr
Date: 2013-06-18 06:32:18 +0000 (Tue, 18 Jun 2013)
Log Message:
-----------
___JmolVersion="13.1.17_dev_2013.06.18"
new feature: CIF reader upgrade to allow multicharacter chain specs.
-- See 1bgl_1bgm.cif
-- automatically switches to chainCaseSensitive if multi-character
or lower-case chains are read in a CIF file.
Modified Paths:
--------------
trunk/Jmol/src/org/jmol/adapter/readers/cifpdb/CifReader.java
Modified: trunk/Jmol/src/org/jmol/adapter/readers/cifpdb/CifReader.java
===================================================================
--- trunk/Jmol/src/org/jmol/adapter/readers/cifpdb/CifReader.java
2013-06-18 06:26:20 UTC (rev 18344)
+++ trunk/Jmol/src/org/jmol/adapter/readers/cifpdb/CifReader.java
2013-06-18 06:32:18 UTC (rev 18345)
@@ -96,6 +96,7 @@
private int configurationPtr = Integer.MIN_VALUE;
private int conformationIndex;
private boolean filterAssembly;
+
private JmolList<Matrix4f> vBiomts;
@@ -106,6 +107,7 @@
private String appendedData;
private boolean skipping;
+ private boolean haveChainsLC;
private int nAtoms;
@Override
@@ -848,7 +850,9 @@
assemblyId = firstChar;
break;
case AUTH_ASYM_ID:
- atom.chainID = viewer.getChainID(field);
+ if (!haveChainsLC && !field.toUpperCase().equals(field))
+ haveChainsLC = (viewer.getChainID("lc") != 0); // force
chainCaseSensitive
+ atom.chainID = viewer.getChainID(field);
break;
case SEQ_ID:
atom.sequenceNumber = parseIntStr(field);
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