Revision: 20127
http://sourceforge.net/p/jmol/code/20127
Author: hansonr
Date: 2014-11-25 12:54:04 +0000 (Tue, 25 Nov 2014)
Log Message:
-----------
Jmol.___JmolVersion="14.3.9_2014.11.25"
bug fix: reading of JVXL file saved with noFill still does fill
bug fix: CASTEP DENSITY surface file reader does not do downsampling
new feature: isosurface "==1blu"
-- difference map fo-fc
-- defaults to sigma=3
-- automatically implements SIGN option
new feature: isosurface RMSD (same as SIGMA)
Modified Paths:
--------------
trunk/Jmol/src/org/jmol/script/T.java
trunk/Jmol/src/org/jmol/scriptext/CmdExt.java
trunk/Jmol/src/org/jmol/viewer/Jmol.properties
Modified: trunk/Jmol/src/org/jmol/script/T.java
===================================================================
--- trunk/Jmol/src/org/jmol/script/T.java 2014-11-25 12:43:48 UTC (rev
20126)
+++ trunk/Jmol/src/org/jmol/script/T.java 2014-11-25 12:54:04 UTC (rev
20127)
@@ -1301,8 +1301,9 @@
public final static int residue = misc | 296;
public final static int resolution = misc | 298;
public final static int reversecolor = misc | 300;
- public final static int rewind = misc | 302;
- public final static int right = misc | 303;
+ public final static int rewind = misc | 301;
+ public final static int right = misc | 302;
+ public final static int rmsd = misc | 303;
public final static int rna3d = misc | 304;
public final static int rock = misc | 305;
public final static int rotate45 = misc | 306;
@@ -2074,6 +2075,7 @@
"rewind",
"reverse",
"right",
+ "rmsd",
"RNA",
"rna3d",
"rock",
@@ -3093,6 +3095,7 @@
rewind, // "rewind"
reverse, // "reverse"
right, // "right"
+ rmsd, // "rmsd"
rna, // "RNA"
rna3d, // "rna3d"
rock, // "rock"
Modified: trunk/Jmol/src/org/jmol/scriptext/CmdExt.java
===================================================================
--- trunk/Jmol/src/org/jmol/scriptext/CmdExt.java 2014-11-25 12:43:48 UTC
(rev 20126)
+++ trunk/Jmol/src/org/jmol/scriptext/CmdExt.java 2014-11-25 12:54:04 UTC
(rev 20127)
@@ -4078,6 +4078,7 @@
propertyValue = Boolean.TRUE;
sbCommand.append(" reversecolor");
break;
+ case T.rmsd:
case T.sigma:
propertyName = "sigma";
propertyValue = Float.valueOf(sigma = floatParameter(++i));
Modified: trunk/Jmol/src/org/jmol/viewer/Jmol.properties
===================================================================
--- trunk/Jmol/src/org/jmol/viewer/Jmol.properties 2014-11-25 12:43:48 UTC
(rev 20126)
+++ trunk/Jmol/src/org/jmol/viewer/Jmol.properties 2014-11-25 12:54:04 UTC
(rev 20127)
@@ -15,7 +15,7 @@
TODO: design and implement sidechain mutation -- MUTATE command ?
TODO: remove HTML5 dependency on synchronous file loading (check SCRIPT
command for problems)
-Jmol.___JmolVersion="14.3.9_2014.11.24"
+Jmol.___JmolVersion="14.3.9_2014.11.25"
bug fix: reading of JVXL file saved with noFill still does fill
bug fix: CASTEP DENSITY surface file reader does not do downsampling
@@ -25,6 +25,8 @@
-- defaults to sigma=3
-- automatically implements SIGN option
+new feature: isosurface RMSD (same as SIGMA)
+
JmolVersion="14.3.9_2014.11.23"
bug fix: isosurface slab plane -xy not recognizing "-"
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