Revision: 20129
http://sourceforge.net/p/jmol/code/20129
Author: hansonr
Date: 2014-11-25 17:41:59 +0000 (Tue, 25 Nov 2014)
Log Message:
-----------
Jmol.___JmolVersion="14.3.9_2014.11.26"
bug fix: hover OFF disables hover callback, but should not
new feature: VASP CHGCAR default cutoff set to 0.5
Modified Paths:
--------------
trunk/Jmol/src/org/jmol/jvxl/readers/VaspChgcarReader.java
trunk/Jmol/src/org/jmol/viewer/Jmol.properties
trunk/Jmol/src/org/jmol/viewer/StatusManager.java
trunk/Jmol/src/org/jmol/viewer/Viewer.java
Modified: trunk/Jmol/src/org/jmol/jvxl/readers/VaspChgcarReader.java
===================================================================
--- trunk/Jmol/src/org/jmol/jvxl/readers/VaspChgcarReader.java 2014-11-25
14:49:11 UTC (rev 20128)
+++ trunk/Jmol/src/org/jmol/jvxl/readers/VaspChgcarReader.java 2014-11-25
17:41:59 UTC (rev 20129)
@@ -25,6 +25,7 @@
import java.io.BufferedReader;
+import org.jmol.util.Logger;
import org.jmol.util.SimpleUnitCell;
import javajs.util.SB;
@@ -94,6 +95,10 @@
}
swapXZ();
volumetricOrigin.set(0, 0, 0);
+ if (params.thePlane == null && (params.cutoffAutomatic ||
!Float.isNaN(params.sigma))) {
+ params.cutoff = 0.5f;
+ Logger.info("Cutoff set to " + params.cutoff);
+ }
}
private int pt;
Modified: trunk/Jmol/src/org/jmol/viewer/Jmol.properties
===================================================================
--- trunk/Jmol/src/org/jmol/viewer/Jmol.properties 2014-11-25 14:49:11 UTC
(rev 20128)
+++ trunk/Jmol/src/org/jmol/viewer/Jmol.properties 2014-11-25 17:41:59 UTC
(rev 20129)
@@ -15,8 +15,14 @@
TODO: design and implement sidechain mutation -- MUTATE command ?
TODO: remove HTML5 dependency on synchronous file loading (check SCRIPT
command for problems)
-Jmol.___JmolVersion="14.3.9_2014.11.25"
+Jmol.___JmolVersion="14.3.9_2014.11.26"
+bug fix: hover OFF disables hover callback, but should not
+
+new feature: VASP CHGCAR default cutoff set to 0.5
+
+JmolVersion="14.3.9_2014.11.25"
+
bug fix: reading of JVXL file saved with noFill still does fill
bug fix: CASTEP DENSITY surface file reader does not do downsampling
Modified: trunk/Jmol/src/org/jmol/viewer/StatusManager.java
===================================================================
--- trunk/Jmol/src/org/jmol/viewer/StatusManager.java 2014-11-25 14:49:11 UTC
(rev 20128)
+++ trunk/Jmol/src/org/jmol/viewer/StatusManager.java 2014-11-25 17:41:59 UTC
(rev 20129)
@@ -344,6 +344,10 @@
new Object[] { sJmol, Integer.valueOf(width),
Integer.valueOf(height) });
}
+ boolean haveHoverCallback() {
+ return (jmolScriptCallbacks.containsKey(CBK.HOVER) ||
notifyEnabled(CBK.HOVER));
+ }
+
synchronized void setStatusAtomHovered(int iatom, String strInfo) {
String sJmol = jmolScriptCallback(CBK.HOVER);
if (notifyEnabled(CBK.HOVER))
Modified: trunk/Jmol/src/org/jmol/viewer/Viewer.java
===================================================================
--- trunk/Jmol/src/org/jmol/viewer/Viewer.java 2014-11-25 14:49:11 UTC (rev
20128)
+++ trunk/Jmol/src/org/jmol/viewer/Viewer.java 2014-11-25 17:41:59 UTC (rev
20129)
@@ -4368,12 +4368,28 @@
shm.loadShape(JC.SHAPE_HOVER);
setShapeProperty(JC.SHAPE_HOVER, "label", strLabel);
hoverEnabled = (strLabel != null);
- if (!hoverEnabled)
+ if (!hoverEnabled && !sm.haveHoverCallback())
startHoverWatcher(false);
}
+ /*
+ * hoverCallback reports information about the atom being hovered over.
+ *
+ * jmolSetCallback("hoverCallback", "myHoverCallback") function
+ * myHoverCallback(strInfo, iAtom) {}
+ *
+ * strInfo == the atom's identity, including x, y, and z coordinates iAtom ==
+ * the index of the atom being hovered over
+ *
+ * Viewer.setStatusAtomHovered Hover.setProperty("target") Viewer.hoverOff
+ * Viewer.hoverOn
+ */
void hoverOn(int atomIndex, boolean isLabel) {
- setStatusAtomHovered(atomIndex, getAtomInfoXYZ(atomIndex, false));
+ g.removeParam("_objecthovered");
+ g.setI("_atomhovered", atomIndex);
+ g.setUserVariable("hovered",
SV.getVariable(BSUtil.newAndSetBit(atomIndex)));
+ if (sm.haveHoverCallback())
+ sm.setStatusAtomHovered(atomIndex, getAtomInfoXYZ(atomIndex, false));
if (!hoverEnabled)
return;
if (g.modelKitMode) {
@@ -4402,11 +4418,18 @@
}
public void hoverOnPt(int x, int y, String text, String id, T3 pt) {
- if (!hoverEnabled)
- return;
// from draw for drawhover on
if (eval != null && isScriptExecuting())
return;
+ if (id != null && pt != null) {
+ g.setO("_objecthovered", id);
+ g.setI("_atomhovered", -1);
+ g.setUserVariable("hovered", SV.getVariable(pt));
+ if (sm.haveHoverCallback())
+ sm.setStatusObjectHovered(id, text, pt);
+ }
+ if (!hoverEnabled)
+ return;
shm.loadShape(JC.SHAPE_HOVER);
setShapeProperty(JC.SHAPE_HOVER, "xy", P3i.new3(x, y, 0));
setShapeProperty(JC.SHAPE_HOVER, "target", null);
@@ -4414,8 +4437,6 @@
setShapeProperty(JC.SHAPE_HOVER, "text", text);
hoverAtomIndex = -1;
hoverText = text;
- if (id != null && pt != null)
- setStatusObjectHovered(id, text, pt);
refresh(3, "hover on point");
}
@@ -4873,30 +4894,6 @@
}
/*
- * hoverCallback reports information about the atom being hovered over.
- *
- * jmolSetCallback("hoverCallback", "myHoverCallback") function
- * myHoverCallback(strInfo, iAtom) {}
- *
- * strInfo == the atom's identity, including x, y, and z coordinates iAtom ==
- * the index of the atom being hovered over
- *
- * Viewer.setStatusAtomHovered Hover.setProperty("target") Viewer.hoverOff
- * Viewer.hoverOn
- */
-
- private void setStatusAtomHovered(int atomIndex, String info) {
- g.setI("_atomhovered", atomIndex);
- g.setUserVariable("hovered",
SV.getVariable(BSUtil.newAndSetBit(atomIndex)));
- sm.setStatusAtomHovered(atomIndex, info);
- }
-
- private void setStatusObjectHovered(String id, String info, T3 pt) {
- g.setO("_objecthovered", id);
- sm.setStatusObjectHovered(id, info, pt);
- }
-
- /*
* loadStructCallback indicates file load status.
*
* jmolSetCallback("loadStructCallback", "myLoadStructCallback") function
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