Revision: 20298
http://sourceforge.net/p/jmol/code/20298
Author: hansonr
Date: 2015-02-16 19:13:29 +0000 (Mon, 16 Feb 2015)
Log Message:
-----------
Jmol.___JmolVersion="14.2.12_2015.02.16"
new feature: x.dot(y) for planes and points -- was present but undocumented
and not working correctly
new feature: (undocumented) x.distance.all(y)
new feature: load MUTATE "==LYS"
-- loads using set appendNew false
-- bypasses regeneration of secondary structure
-- not to be documented
-- issued by MUTATE command only
bug fix: write isosurface "./xxx.jvxl" broken -- concatenates "isosurface"
with filename
bug fix: write ISOSURFACE by itself broken (similarly for write POINTGROUP and
others)
bug fix: MUTATE command adjustments for saving state
bug fix: MUTATE command should not force recreation of shapes
bug fix: MUTATE command should not change backbone atoms
bug fix: x = measure(a,b) where b is {none} crashes Jmol
bug fix: compare({atomA},{atomsB}) should return standard 4x4 matrix, not one
involving a rotation
about an atom center
-- (not adjusted when ROTATESELECTED was fixed in 14.3.11_2014.12.17; Angel
Herraez)
code: org.jmol.modelsetbio.BioExt
-- extracts struts, quaternion plots, polymerInfo, mutate into optional module
-- saves 15K in corebio.js
Modified Paths:
--------------
trunk/Jmol/src/org/jmol/script/ScriptCompiler.java
trunk/Jmol/src/org/jmol/scriptext/CmdExt.java
trunk/Jmol/src/org/jmol/viewer/Jmol.properties
Modified: trunk/Jmol/src/org/jmol/script/ScriptCompiler.java
===================================================================
--- trunk/Jmol/src/org/jmol/script/ScriptCompiler.java 2015-02-16 06:27:21 UTC
(rev 20297)
+++ trunk/Jmol/src/org/jmol/script/ScriptCompiler.java 2015-02-16 19:13:29 UTC
(rev 20298)
@@ -1160,7 +1160,7 @@
if (lookingAtImpliedString(true, true, true)) {
int pt = cchToken;
String str = script.substring(ichToken, ichToken + cchToken);
- if (str.indexOf(" ") < 0) {
+ if (str.indexOf(" ") < 0 && str.indexOf(".") >= 0) {
addTokenToPrefix(T.o(T.string, str));
iHaveQuotedString = true;
return CONTINUE;
Modified: trunk/Jmol/src/org/jmol/scriptext/CmdExt.java
===================================================================
--- trunk/Jmol/src/org/jmol/scriptext/CmdExt.java 2015-02-16 06:27:21 UTC
(rev 20297)
+++ trunk/Jmol/src/org/jmol/scriptext/CmdExt.java 2015-02-16 19:13:29 UTC
(rev 20298)
@@ -3232,19 +3232,6 @@
case T.identifier:
case T.string:
fileName = SV.sValue(tokenAt(pt, args));
- if (pt == argCount - 3 && tokAtArray(pt + 1, args) == T.per) {
- // write filename.xxx gets separated as filename .spt
- // write isosurface filename.xxx also
- fileName += "." + SV.sValue(tokenAt(pt + 2, args));
- }
- if (type != "VAR" && pt == pt0 && !isCoord)
- type = "IMAGE";
- else if (fileName.length() > 0 && fileName.charAt(0) == '.'
- && (pt == pt0 + 1 || pt == pt0 + 2)) {
- fileName = SV.sValue(tokenAt(pt - 1, args)) + fileName;
- if (type != "VAR" && pt == pt0 + 1)
- type = "IMAGE";
- }
if (fileName.equalsIgnoreCase("clipboard")
|| !vwr.haveAccess(ACCESS.ALL))
fileName = null;
Modified: trunk/Jmol/src/org/jmol/viewer/Jmol.properties
===================================================================
--- trunk/Jmol/src/org/jmol/viewer/Jmol.properties 2015-02-16 06:27:21 UTC
(rev 20297)
+++ trunk/Jmol/src/org/jmol/viewer/Jmol.properties 2015-02-16 19:13:29 UTC
(rev 20298)
@@ -15,7 +15,7 @@
TODO: remove HTML5 dependency on synchronous file loading (check SCRIPT
command for problems)
TODO: add 2D graphics panel for Ramachandran and NBO-style 2D graphics -- send
to browser as data uri?
-Jmol.___JmolVersion="14.3.12_2015.02.14"
+Jmol.___JmolVersion="14.2.12_2015.02.16"
new feature: x.dot(y) for planes and points -- was present but undocumented
and not working correctly
new feature: (undocumented) x.distance.all(y)
@@ -26,6 +26,8 @@
-- not to be documented
-- issued by MUTATE command only
+bug fix: write isosurface "./xxx.jvxl" broken -- concatenates "isosurface"
with filename
+bug fix: write ISOSURFACE by itself broken (similarly for write POINTGROUP
and others)
bug fix: MUTATE command adjustments for saving state
bug fix: MUTATE command should not force recreation of shapes
bug fix: MUTATE command should not change backbone atoms
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