Revision: 20586
http://sourceforge.net/p/jmol/code/20586
Author: hansonr
Date: 2015-06-18 06:31:30 +0000 (Thu, 18 Jun 2015)
Log Message:
-----------
Jmol.___JmolVersion="14.3.15_2015.06.18"
bug fix: Polygons not indicating visibility when they are the only thing
visible.
Modified Paths:
--------------
trunk/Jmol/src/org/jmol/shapebio/Backbone.java
trunk/Jmol/src/org/jmol/shapespecial/Dots.java
trunk/Jmol/src/org/jmol/shapespecial/Ellipsoids.java
trunk/Jmol/src/org/jmol/shapespecial/Polyhedra.java
trunk/Jmol/src/org/jmol/viewer/Jmol.properties
Modified: trunk/Jmol/src/org/jmol/shapebio/Backbone.java
===================================================================
--- trunk/Jmol/src/org/jmol/shapebio/Backbone.java 2015-06-18 05:40:34 UTC
(rev 20585)
+++ trunk/Jmol/src/org/jmol/shapebio/Backbone.java 2015-06-18 06:31:30 UTC
(rev 20586)
@@ -108,7 +108,7 @@
public void addDisplayedBackbone(Atom a, boolean isVisible) {
a.nBackbonesDisplayed += (isVisible ? 1 : -1);
- a.setShapeVisibility(vf, isVisible);
+ setShapeVisibility(a, isVisible);
}
@Override
Modified: trunk/Jmol/src/org/jmol/shapespecial/Dots.java
===================================================================
--- trunk/Jmol/src/org/jmol/shapespecial/Dots.java 2015-06-18 05:40:34 UTC
(rev 20585)
+++ trunk/Jmol/src/org/jmol/shapespecial/Dots.java 2015-06-18 06:31:30 UTC
(rev 20586)
@@ -252,7 +252,7 @@
}
for (int i = ac; --i >= 0;) {
- atoms[i].setShapeVisibility(vf, bsOn.get(i));
+ setShapeVisibility(atoms[i], bsOn.get(i));
}
if (!isVisible)
return;
Modified: trunk/Jmol/src/org/jmol/shapespecial/Ellipsoids.java
===================================================================
--- trunk/Jmol/src/org/jmol/shapespecial/Ellipsoids.java 2015-06-18
05:40:34 UTC (rev 20585)
+++ trunk/Jmol/src/org/jmol/shapespecial/Ellipsoids.java 2015-06-18
06:31:30 UTC (rev 20586)
@@ -423,7 +423,7 @@
setVis(simpleEllipsoids, bsModels, atoms);
if (atomEllipsoids != null)
for (int i = atoms.length; --i >= 0;)
- atoms[i].setShapeVisibility(vf, false);
+ setShapeVisibility(atoms[i], false);
setVis(atomEllipsoids, bsModels, atoms);
}
@@ -438,7 +438,7 @@
boolean isModAtom = ms.isModulated(t.atomIndex1);
isOK =(!isModTensor && !isUnmodTensor || isModTensor == isModAtom);
}
- atoms[t.atomIndex1].setShapeVisibility(vf, true);
+ setShapeVisibility(atoms[t.atomIndex1], true);
}
e.visible = isOK && (e.modelIndex < 0 || bs.get(e.modelIndex));
}
Modified: trunk/Jmol/src/org/jmol/shapespecial/Polyhedra.java
===================================================================
--- trunk/Jmol/src/org/jmol/shapespecial/Polyhedra.java 2015-06-18 05:40:34 UTC
(rev 20585)
+++ trunk/Jmol/src/org/jmol/shapespecial/Polyhedra.java 2015-06-18 06:31:30 UTC
(rev 20586)
@@ -908,6 +908,9 @@
&& !ms.isAtomHidden(p.centralAtom.i)
&& !ms.at[p.centralAtom.i].isDeleted() ? vf
: 0);
+ if (p.visibilityFlags != 0)
+ setShapeVisibility(atoms[p.centralAtom.i], true);
+
}
}
Modified: trunk/Jmol/src/org/jmol/viewer/Jmol.properties
===================================================================
--- trunk/Jmol/src/org/jmol/viewer/Jmol.properties 2015-06-18 05:40:34 UTC
(rev 20585)
+++ trunk/Jmol/src/org/jmol/viewer/Jmol.properties 2015-06-18 06:31:30 UTC
(rev 20586)
@@ -14,8 +14,12 @@
TODO: remove HTML5 dependency on synchronous file loading (check SCRIPT
command for problems)
-Jmol.___JmolVersion="14.3.15_2015.06.17"
+Jmol.___JmolVersion="14.3.15_2015.06.18"
+bug fix: Polygons not indicating visibility when they are the only thing
visible.
+
+JmolVersion="14.3.15_2015.06.17"
+
new feature: extracting array of sequential arrays from array of associative
arrays
-- pull out just the values desired into a sequential array
-- example, where b is an array of associative arrays [....., energy:...,
pointGroup....]
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