I fixed this ... never mind :-)
Miguel > Dave, > > When looking at 1crn.pdb I see a strange 'hairpin turn' at one end of the > chain. > > I am quite sure that this is my bug, not yours. > > But since you have been working on this code recently you are probably > more familiar with it than me. > > Try the following: > > load samples/pdb/1crn.pdb > wireframe off; cpk off; > select alpha; cpk .4 > backbone .3; color backbone lime > strands .75; color strands hotpink > > On one of the ends, the strands are curling back to the second > alpha-carbon. > > Your Ribbons/Mesh code has inherited this behavior. > > Q: Can you confirm that this is a bug? > > I suspect that it is in the routine Strands.calcCentersAndVectors, either > at the beginning or the end of the loop. But it has been so long since I > looked at that code that I cannot get my head around it right now. > > Please do not feel obligated to fix it. > > It would be helpful for me if you could just confirm whether or not it > looks like a bug to you in the rendering of 1crn.pdb. > > -- > > Separately, we should think about changing the class hierarchy with > Strands.java/Ribbons.java/Mesh.java so that all the classes inherit from a > common base class. That way we can eliminate the redundant code between > those classes. > > Miguel ------------------------------------------------------- This SF.Net email is sponsored by Sleepycat Software Learn developer strategies Cisco, Motorola, Ericsson & Lucent use to deliver higher performing products faster, at low TCO. http://www.sleepycat.com/telcomwpreg.php?From=osdnemail3 _______________________________________________ Jmol-developers mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-developers
