I'd like to see a couple of files that shows this at work.
Bob
Miguel wrote:
documentation updated. How's this?
See
http://www.stolaf.edu/people/hansonr/jmol/docs/?search=temperature
color [temperature-mode]
Color atoms based on an absolute "temperature" scale from blue ("cold", less motion) to red ("hot", more motion) or using a relative "temperature" scale from blue ("coldest", least motion) to red ("hottest", most motion). This presumes crystallographic B-factor information.
where
[temperature-mode] is "fixedTemperature" or "relativeTemperature"
I think that's what we're talking about.
Essentially yes
color {object} temperature
Is RasMol/Chime compatible. The range is scaled to the min/max values that actually occur in the model. There is a difference from RasMol/Chime. The neutral color in RasMol/Chime is green. So RasMol/Chime go blue->green->red. Jmol goes blue->white->red
"relativeTemperature" is an alias for "temperature".
Q: Do you prefer 'scaledTemperature' instead of 'relativeTemperature'?
color {object} fixedTemperature
Will color things on an absolute scale from 0 to 100. 0 is always full blue. 50 is white 100 is full red.
Miguel
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