Bugs item #1201714, was opened at 2005-05-13 19:13 Message generated for change (Comment added) made by migueljmol You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1201714&group_id=23629
Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: File Input/Output Group: CVS >Status: Closed >Resolution: Invalid Priority: 1 Submitted By: Lisong Sun (lisong) Assigned to: Miguel (migueljmol) Summary: Jmol10 having problem with CML1 format Initial Comment: I was trying update our website with JmolApplet version 10 and found out that version 10 won't read most of the CML files. It wasn't a problem with version 9. Actually if you try to open CML sample files under jmol-9/samples, for example methanol1.cml, it shows the error message "java.net.MalformedURLException: no protocol: cml.dtd". After I removed the line that contains "cml.dtd", the error message became "No atoms in file". Same thing happened when I try to open most of the other CML files. I tested it under different platforms and using different Java versions. I think it must be a CML reader problem. Thanks for any help. ---------------------------------------------------------------------- >Comment By: Miguel (migueljmol) Date: 2005-06-02 22:16 Message: Logged In: YES user_id=1050060 Jmol 10 explicitly does not support CML1. We only want to support CML2. If you need help converting your files to CML2 then ask on the jmol-users mailing list. ---------------------------------------------------------------------- Comment By: Lisong Sun (lisong) Date: 2005-05-18 19:13 Message: Logged In: YES user_id=1278359 After read through src/org/jmol/adapter/smarter/CmlReader.java, I guess I asked the wrong question. It says in CmlReader.java "A CML2 Reader, it does not support the old CML1 architecture.". And the test examples I used were all CML1 format. So I guess Jmol will no longer support CML1. Thanks anyway. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1201714&group_id=23629 ------------------------------------------------------- This SF.Net email is sponsored by Yahoo. Introducing Yahoo! Search Developer Network - Create apps using Yahoo! Search APIs Find out how you can build Yahoo! directly into your own Applications - visit http://developer.yahoo.net/?fr=offad-ysdn-ostg-q22005 _______________________________________________ Jmol-developers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-developers
