Bugs item #945203, was opened at 2004-04-30 06:32 Message generated for change (Settings changed) made by migueljmol You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=945203&group_id=23629
Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Scripting Group: None >Status: Closed Resolution: None Priority: 5 Submitted By: Miguel (michaelthoward) Assigned to: Miguel (migueljmol) Summary: color hbonds type Initial Comment: ---------------------------- Original Message ---------------------------- Subject: Re: [Jmol-users] color hbonds From: "Miguel" <[EMAIL PROTECTED]> Date: Fri, April 30, 2004 12:31 To: [email protected] -------------------------------------------------------------------------- Jan wrote: > Hi Miguel, > type is a very useful predefined set in RasMol2.7.2.. > http://www.openrasmol.org/doc/rasmol.html#hbondtypecolours OK, thanks. I was not aware that it existed. I will file a bug report to make sure it gets implemented. Miguel >From the RasMol 2.6b2 documentation HBond Type Colours The RasMol type colour scheme applies only to hydrogen bonds, hence is used in the command "colour hbonds type" This scheme colour codes each hydrogen bond according to the distance along a protein chain between hydrogen bond donor and acceptor. This schematic representation was introduced by Belhadj-Mostefa and Milner-White. This representation gives a good insight into protein secondary structure (hbonds forming alpha helices appear red, those forming sheets appear yellow and those forming turns appear magenta). Offset Colour Triple +2 white [255,255,255] +3 magenta [255,0,255] +4 red [255,0,0] +5 orange [255,165,0] -3 cyan [0,255,255] -4 green [0,255,0] default yellow [255,255,0] ---------------------------------------------------------------------- Comment By: Miguel (migueljmol) Date: 2004-05-28 08:25 Message: Logged In: YES user_id=1050060 mostly implemented ... but I think it still has bugs do: 1crn.pdb hbonds .5 color hbonds type and compare colors with rasmol ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=945203&group_id=23629 ------------------------------------------------------- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnk&kid=110944&bid=241720&dat=121642 _______________________________________________ Jmol-developers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-developers
