Feature Requests item #1327983, was opened at 2005-10-16 17:11 Message generated for change (Comment added) made by aherraez You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379136&aid=1327983&group_id=23629
Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Interface Improvements Group: v10 Status: Open Priority: 5 Submitted By: Angel Herraez (aherraez) Assigned to: Nobody/Anonymous (nobody) Summary: select by chain in the menu Initial Comment: The pop-up menu allows to color by chain. It would be interesting --for the naive user, not the command line-- to be able to select a chain in the model, similarly to existing select by model, by residue name, by element... [EMAIL PROTECTED] ---------------------------------------------------------------------- >Comment By: Angel Herraez (aherraez) Date: 2006-04-30 20:48 Message: Logged In: YES user_id=1065324 1gzx.pdb : 1 model, several chains (4 protein chains, including hetero ligands, and 4 water "chains") 1ch1.pdb : 1 model, 1 chain, labeled 'A' 1myf.pdb: 12 models, 1 chain, no chain ID 1hls.pdb : 20 models, 2 chains A and B ---------------------------------------------------------------------- Comment By: Nicolas (nicove) Date: 2006-04-30 20:22 Message: Logged In: YES user_id=1096197 Angel, could you point me to a data files for testing this feature ? I'd like file(s) with: - multiple models, - some chain ID existing in one model - some chain ID existing in several models ---------------------------------------------------------------------- Comment By: Angel Herraez (aherraez) Date: 2006-03-26 20:22 Message: Logged In: YES user_id=1065324 To select chain "a", the script is select *:a (Chain ID's can be a to z, A to Z, 1 to n; may be case-sensitive depending on the setting of "set ChainCaseSensitive") I would not expect to have a choice depending on models; I don't think there is one when selecting by residue name or element name. So, selecting chain A would select that chain in all models. A list of available chains would be enough, as one gets when choosing "Select > Protein > Residue name". ---------------------------------------------------------------------- Comment By: Nicolas (nicove) Date: 2006-03-26 13:58 Message: Logged In: YES user_id=1096197 I started looking at this and I have questions : - simple one: what is the script command to select a chain ? - for other developers: how do I get access to the list of chains through the JmolViewer API ? - functional: how should the list be displayed, especially for a multi-model file ? : * with sub-menu for each model ? * everything at the same level, but then how do you deal with a chain ID that exists in several models ? display it for each model (with a label like <Model>-<ChainID>), display it once so that it selects the chain is each model, ... ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379136&aid=1327983&group_id=23629 ------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ Jmol-developers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-developers
