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On Monday 23 February 2004 15:27, Daniel Zaharevitz wrote:
> On Monday, February 9, 2004, at 04:09 PM, Daniel Zaharevitz wrote:
> > Our software development efforts (See
> > http://dtp.nci.nih.gov/dw/dw_main.html) have reached the point where
> > we are likely to get more involved in the current JMol efforts and we
> > want to make our efforts be as broadly useful as possible.
>
> It was pointed out to me that the URL listed above had some broken
> links. Those should now be fixed and the page has been updated.
>
> One of the next things we are going to do is update our servlets and I
> thought it would be a good time to get current with Jmol developments.
> As I read the notes on the v10 Beta, it seems that CML and loadInLine
> are not yet supported. Is this true and if so what are the issues? It
> is something we can not do without, so maybe our first direct
> contributions to Jmol could be working on this.

Ok, here's the story:

The about to be release, and probably released v9 release does support CML, 
but does not have the great performance of the new rendering engine yet.

The v10 release also supports CML, but needs some tweaks:

1. the application supports it if Jmol is started like this:

java -Dmodel=cdk -jar Jmol.jar

2. the applet does not support CML by default, because the applet will be much 
bigger.

But, we should have a v10 based applet that does support CML. I totally agree. 
Sofar, I've been focussing on Jmol v9, which is now finally released... about 
two months later than I had planned... (but Jmol is not the principle part of 
my PhD).

Anyway, with v9 release, I can put focus on v10. And one of my first things 
will be to make a CML enabled v10 applet. I'll discuss with Miguel how we are 
going to do this...

For now, I recommend v9 which does not have bad performace, and for small 
molecules you won't notice the difference...

Egon

- -- 
[EMAIL PROTECTED]
PhD on Molecular Representation in Chemometrics
Nijmegen University
http://www.cac.sci.kun.nl/people/egonw/
GPG: 1024D/D6336BA6

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