Bugs item #945203, was opened at 2004-04-30 12:32 Message generated for change (Tracker Item Submitted) made by Item Submitter You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=945203&group_id=23629
Category: Scripting Group: None Status: Open Resolution: None Priority: 5 Submitted By: Miguel (michaelthoward) Assigned to: Miguel (michaelthoward) Summary: color hbonds type Initial Comment: ---------------------------- Original Message ---------------------------- Subject: Re: [Jmol-users] color hbonds From: "Miguel" <[EMAIL PROTECTED]> Date: Fri, April 30, 2004 12:31 To: [EMAIL PROTECTED] -------------------------------------------------------------------------- Jan wrote: > Hi Miguel, > type is a very useful predefined set in RasMol2.7.2.. > http://www.openrasmol.org/doc/rasmol.html#hbondtypecolours OK, thanks. I was not aware that it existed. I will file a bug report to make sure it gets implemented. Miguel >From the RasMol 2.6b2 documentation HBond Type Colours The RasMol type colour scheme applies only to hydrogen bonds, hence is used in the command "colour hbonds type" This scheme colour codes each hydrogen bond according to the distance along a protein chain between hydrogen bond donor and acceptor. This schematic representation was introduced by Belhadj-Mostefa and Milner-White. This representation gives a good insight into protein secondary structure (hbonds forming alpha helices appear red, those forming sheets appear yellow and those forming turns appear magenta). Offset Colour Triple +2 white [255,255,255] +3 magenta [255,0,255] +4 red [255,0,0] +5 orange [255,165,0] -3 cyan [0,255,255] -4 green [0,255,0] default yellow [255,255,0] ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=945203&group_id=23629 ------------------------------------------------------- This SF.Net email is sponsored by: Oracle 10g Get certified on the hottest thing ever to hit the market... Oracle 10g. Take an Oracle 10g class now, and we'll give you the exam FREE. http://ads.osdn.com/?ad_id=3149&alloc_id=8166&op=click _______________________________________________ Jmol-developers mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-developers
