timothy driscoll wrote:
it would be very useful to have a way to access different sub-categories of hydrogen bonds, though:
select hbonds interchain select hbonds sidechain select hbonds mainchain
but I think the default should be to color all hbonds white, inheriting the CPK color for hydrogen. and there should be no code-level distinction between protein and nucleic hydrogen bonds - one can easily build selections to tweak those apart. IMO of course :-) KIS (keep it simple).
and then there's intrachain sidechain-mainchain, interchain sidechain-mainchain.... It's a clever scheme they've come up with. I was having some fun displaying proteins with just the hydrogen bonds indicated. It is quite interesting how much information is there just with this clever little offset business. I think you would find sidechain/mainchain/interchain/intrachain issues very confusing to anyone but the experts, and they will happily color them specially anyway if they feel it's important.
Bob Hanson
regards,
tim
--
Robert M. Hanson, [EMAIL PROTECTED], 507-646-3107 Professor of Chemistry, St. Olaf College 1520 St. Olaf Ave., Northfield, MN 55057 mailto:[EMAIL PROTECTED] http://www.stolaf.edu/people/hansonr
"Imagination is more important than knowledge." - Albert Einstein
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