Bugs item #986230, was opened at 2004-07-06 22:58 Message generated for change (Comment added) made by migueljmol You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=986230&group_id=23629
Category: Applet Group: None >Status: Closed >Resolution: Invalid Priority: 5 Submitted By: Nobody/Anonymous (nobody) Assigned to: Miguel (migueljmol) Summary: How to loadInline Mol files? Initial Comment: Hi, I am hoping to use JMOL in a chemi/bioinformatics application that I am putting together with HTML DB (from Oracle) and Oracle 10g database. With JMOL I can display chemical structures alongside assay data and other chemical Data in rows in reports resulting from sql queries. I also plan to integrate pdb files of targets and x-ray structures as well as models of compounds bound into them with the assay data. In particular I am interested in using 'loadInline' to automatically load Molfiles. I seem to be having troubles with this. In particular, if I have a textarea with name="form.textarea" and put the molfile in there I am able to read it into Jmol applet with : <INPUT TYPE="button" VALUE="Get mol in Jmol" onClick="document.jmol.loadInline (document.form.textarea.value)"> However, this doesn't work within the applet tags: <applet name="jmol" code="JmolApplet" archive="JmolApplet.jar" width="350" height="350" align="left"> <param name="progressbar" value="true"> <PARAM NAME="loadInline" VALUE="document.form.molfile.value"> </applet> Any suggestions would be greatly appreciated. Thank you very much! David Hecht Idun Pharmaceuticals [EMAIL PROTECTED] ---------------------------------------------------------------------- >Comment By: Miguel (migueljmol) Date: 2004-07-19 18:20 Message: Logged In: YES user_id=1050060 I think that we are all set on this issue. ---------------------------------------------------------------------- Comment By: Nobody/Anonymous (nobody) Date: 2004-07-07 16:05 Message: Logged In: NO I apologize for misleading you yesterday, David. I believe the only problem with your code is the "VALUE=" line of the loadInline parameter, which is causing a load error in the Jmol applet. Your code works for me when I simply remove the <param name="loadInline"> tag. For more examples (now that I think I have this right!) see http://www.stolaf.edu/people/hansonr/jmol/inline/simple.htm (your code) and http://www.stolaf.edu/people/hansonr/jmol/inline/index.htm (with frames, probably works in NN4) and http://www.stolaf.edu/people/hansonr/jmol/inline/inline2.htm (with span and document.getElementById, won't work in NN4) Bob Hanson ---------------------------------------------------------------------- Comment By: Nobody/Anonymous (nobody) Date: 2004-07-07 07:20 Message: Logged In: NO .loadInline() fails to properly load the model. I have adjusted http://www.stolaf.edu/people/hansonr/jmol/inline/ to do a more thorough test. Findings on IE or NN: 1) In all three cases, .mol, .gout, .xyz, document.write() with the loadInline parameter works. In the .xyz case, animation succeeds. for .gout, vectors are shown, and vibration initiates. 2) For .mol and .xyz files, jmol.loadInline() fails to load the model and reports "file type jme" with no atoms 3) For .gout, jmol.loadInline() loads the model but fails to show vectors or start vibration. Bob Hanson ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=986230&group_id=23629 ------------------------------------------------------- This SF.Net email is sponsored by BEA Weblogic Workshop FREE Java Enterprise J2EE developer tools! Get your free copy of BEA WebLogic Workshop 8.1 today. http://ads.osdn.com/?ad_id=4721&alloc_id=10040&op=click _______________________________________________ Jmol-developers mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-developers
