Bugs item #1005888, was opened at 2004-08-09 12:45 Message generated for change (Comment added) made by migueljmol You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1005888&group_id=23629
Category: File Input/Output Group: None Status: Open Resolution: None Priority: 5 Submitted By: Egon Willighagen (egonw) >Assigned to: Egon Willighagen (egonw) Summary: CVS fails to recognize CML files with namespaces Initial Comment: The ModelResolver recognizes CML with strings like "<molecule", but that will not work for namespaced files which have things like "<XXXX:molecule" where XXXX can be anything... (well, not really, but from plain text point of few this is almost correct)... We cannot use regular expression can we? Miguel, comments? ---------------------------------------------------------------------- >Comment By: Miguel (migueljmol) Date: 2004-08-15 19:32 Message: Logged In: YES user_id=1050060 Egon, I am assigning this issue to you so that you can decide whether or not it can be closed. ---------------------------------------------------------------------- Comment By: Miguel (migueljmol) Date: 2004-08-12 13:47 Message: Logged In: YES user_id=1050060 OK, I looked at this and it looks fine to me. A few other thoughts: 1) if the string http://www.xml-cml.org/schema/cml2/core is a requirement for cml2 files then this is the right way to do it. 2) if other namespaces need to be supported then we could add the string ":molecule" and that would work. 3) in the future we could handle CML as a special case and quite easily do a special search for <XXXX: Miguel ---------------------------------------------------------------------- Comment By: Egon Willighagen (egonw) Date: 2004-08-09 13:51 Message: Logged In: YES user_id=25678 Ok, communication problem... the link is an URI, not a URL... and the URI's used for namescapes are not necessariry pointing to an existing web page... It 'points' to the CML2 schema (see http://wwmm.ch.cam.ac.uk/moin/CmlCore). And I want to add this URI as specific string... <cml:molecule is really of type <XXXX:molecule... XXXX can be anything, the 'cml' was just an example... therefor, we cannot use <cml:molecule... Egon ---------------------------------------------------------------------- Comment By: Miguel (migueljmol) Date: 2004-08-09 13:42 Message: Logged In: YES user_id=1050060 The link to : http://www.xml-cml.org/schema/cml2/core does not work for me. It looks like there is no cml2 subdirectory under /schema I would like to take a look and see what the strings are like that are in there. Yes, go ahead and add <cml:molecule ---------------------------------------------------------------------- Comment By: Egon Willighagen (egonw) Date: 2004-08-09 13:35 Message: Logged In: YES user_id=25678 Right... Should have remembered... :) It's a ModelResolver problem... the exact problem is this... The CMLRSS channels have CML content like <cml:molecule (where XXXX is the cml part here) instead of just <molecule. Thus, these files do not get recognized as CML :( Ofcourse I can add <cml:molecule to the list of recognized string, but that's not very efficient... how about adding http://www.xml-cml.org/schema/cml2/core... this might occur on text documents too, but that holds also for other things... This URI is the actual namespace to which the cml: points... and quite specific to CML2 files... Shall I add that string to the ModelResolver? Egon ---------------------------------------------------------------------- Comment By: Miguel (migueljmol) Date: 2004-08-09 13:27 Message: Logged In: YES user_id=1050060 Unfortunately, we do not get regular expressions on old JVMs. I don't have a clear understanding of the problem ... Is the problem just in the ModelResolver ... or does the CmlReader have the same problem? ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1005888&group_id=23629 ------------------------------------------------------- SF.Net email is sponsored by Shop4tech.com-Lowest price on Blank Media 100pk Sonic DVD-R 4x for only $29 -100pk Sonic DVD+R for only $33 Save 50% off Retail on Ink & Toner - Free Shipping and Free Gift. http://www.shop4tech.com/z/Inkjet_Cartridges/9_108_r285 _______________________________________________ Jmol-developers mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-developers
