Bugs item #977396, was opened at 2004-06-22 13:51 Message generated for change (Comment added) made by migueljmol You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=977396&group_id=23629
Category: None Group: None >Status: Closed >Resolution: Fixed Priority: 5 Submitted By: JR (interessent) Assigned to: Miguel (migueljmol) Summary: protein failes if *.O is called *.O1 Initial Comment: in 4thn http://www.imb-jena.de/cgi-bin/SCOPlnk.exe?JMOL=4thn the unusual amino acides are not recognized as protein, because *.O is called *.O1 with 1amt (an other [AIB] containing structure) there is a java.lang.ArrayIndexOutOfBoundsException: 1 at org.openscience.jmol.viewer.datamodel.AlphaPolymer.extendRuns(AlphaPolymer.java:184) ---------------------------------------------------------------------- >Comment By: Miguel (migueljmol) Date: 2004-09-18 00:34 Message: Logged In: YES user_id=1050060 The names O and O1 are both acceptable now ---------------------------------------------------------------------- Comment By: Miguel (migueljmol) Date: 2004-07-19 19:01 Message: Logged In: YES user_id=1050060 Jan, Are you just talking about the AIB groups 22 & 23 ? Do you think that we should allow O1 as an acceptable atom name for the carbonyl oxygen? If we make this change, do you think that it will cause other problems? Miguel ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=977396&group_id=23629 ------------------------------------------------------- This SF.Net email is sponsored by: YOU BE THE JUDGE. Be one of 170 Project Admins to receive an Apple iPod Mini FREE for your judgement on who ports your project to Linux PPC the best. Sponsored by IBM. Deadline: Sept. 24. Go here: http://sf.net/ppc_contest.php _______________________________________________ Jmol-developers mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-developers
