On 2004-09-29 (11:03) Miguel wrote:
>>
>>I am working with the monitors in JmolApplet v10pre14a.  The monitor
>>lines only work when the residues that contain the atoms being
>>measured are in wireframe or spacefill - they do not show up in
>>backbone or cartoon.  is this a bug that you can easily fix?
>
>Hmmm ... donÂt know why that is happening.
>
>It probably will not be difficult to fix, but I am travelling (Âin
>EspaÃa!) and will probably not be able to look at it for a few days.
>

enjoy Espana :-)


more info - this monitors bug only appears to affect 'cartoon' shapes.
if I do this in 1CRN, the monitor works fine:


select all
backbone 0.7
select backbone and not oxygen
wireframe 0.1

set monitor off
set monitor 0.55

monitor 9 232
# these are two alpha carbons



now if I turn off the wireframe, leaving the backbone, the monitor
disappears:

wireframe off



same deal if I use cartoon instead of backbone.  maybe turning off the
'real' shapes (atoms and bonds) also turns off the monitor lines?


btw, this is reverse of RasMol - turning off everything still leaves
monitors, hbonds, and ssbonds.  these must be turned off explicitly.


I will log this bug at the sf site.  I looked in the source, but I'm out
of my league ( not too hard, sadly :-(



regards,

tim
-- 
Timothy Driscoll
molvisions - see, grasp, learn.
<http://www.molvisions.com/>
usa:north carolina:wake forest


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