Peter & Miguel wrote:
>> > - translation.  By default Jmol moves all the atoms into the unit cell
>> > (0,0,0)-> (1,1,1).
>>
>>Q: Do these files have cartesian coordinates or fractional coordinates?
>
> CIFs normally have fractionals
>
>
>>Q: Can you send me a small sample file off-list?
>
> attached

Peter,

I do not see that Jmol is moving all the atoms into the unit cell.

This sample file contains some atoms that negative y and z fractional
coordinates.

When I say 'set unitcell on' in Jmol I see that there are atoms outside
the box.

Also, I took a brief look at the code and I don't see any place where this
type of translation is taking place.

Please advise.



Miguel


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Open Source Molecular Visualization
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