>> In using 1CRN.pdb none of the bridges are consecutive (unless I tag both >> the donors and recipients). Even then, there are things that look like >> to me that they should be tagged, because their two neighboring residues >> are participating in the sheet. >> >> But, if I allow gaps in the tags then non-sheet things get included. >> >> Please advise > > How can I run your sec.struct. finder?
A very good question ... > 1CRN has that in the PDB file > (correct?) so it will load that by default? I just went in and deleted the 'HELIX', 'SHEET', and 'TURN' records from 1CRN.pdb, then saved it as something else. If you look at the console you will see lots of debugging output during the process of calculating the structures. Q: Can anyone recommend anything smaller/simpler that would be good for recognizing sheets? Even a fragment? One for parallel and a separate one for antiparallel ... Miguel ----- Open Source Molecular Visualization www.jmol.org [EMAIL PROTECTED] ----- ------------------------------------------------------- This SF.Net email is sponsored by: Sybase ASE Linux Express Edition - download now for FREE LinuxWorld Reader's Choice Award Winner for best database on Linux. http://ads.osdn.com/?ad_idU88&alloc_id065&op=click _______________________________________________ Jmol-developers mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-developers
