Bugs item #911813, was opened at 2004-03-08 03:40
Message generated for change (Settings changed) made by migueljmol
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Category: Graphics
Group: None
>Status: Closed
>Resolution: Postponed
Priority: 5
Submitted By: Miguel (michaelthoward)
Assigned to: molvisions (molvisions)
Summary: DRuMS color schemes

Initial Comment:
Paul wrote:
> The command "color shapely" colors pink both thymines
and cytosines. IMO
> they should be distinguishable as they are in the
drums color scheme
> proposed here http://www.umass.edu/molvis/drums/
> (with the chime color scheme for shapely, some of my
slightly color
> blind students found it difficult to distinguish
between some
> nucleotides)

Paul,

Good suggestion.

Jmol has adopted the DRuMS colors in some areas, but
not all.

What do you think about adding some additional 'color'
commands to support
the various 'drums' schemes.

color atoms drums-macromolecule
color atoms drums-element
color atoms drums-polarity
color atoms drums-charge
color atoms drums-nucleotide-pairs
color atoms drums-nucleotide-bases

'atoms' could be replaced with any other type of object
(trace, backbone,
etc.)

These names may not be good.

Tim, I think this is on your list of things to do :-)




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Comment By: Miguel (michaelthoward)
Date: 2004-03-08 05:38

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I agree that the names are quite long. 


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Comment By: molvisions (molvisions)
Date: 2004-03-08 04:55

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Miguel and Paul,

this is on my list and I like your suggestions.  although the commands are 
a bit long.  I'll try to think up something shorter...

:tim


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