Miguel wrote: > Jmol is able to read fullRhinovirus.pdb.gz on both > Linux and OSX. It is slow in loading and slow to > display, but it works ... > 392520 atoms and 415260 bonds > > On Win32 it is raising the 'String out of bounds' > exception that you pointed out. > > That is quite unfortunate. I believe that this is > the first case of a cross-platform incompatibility > that I have found at this level. > > Will advise.
Good news ... this is a simple problem. The .pdb.gz file was corrupt on Win32 It was not checked into CVS as a binary I removed it and added it back as binary Works fine on Win32. My Win32 machine is a 400 Mhz with 128Mb of RAM. To load fullRhinovirus.pdb.gz ... it took 6 minutes 31 seconds for the PdbReader to read it it took another 1 hour and 55 minutes to build the internal Jmol data structures. virtual memory was *way* overcommitted, so the hard disk was pegged the whole time Rendering each frame takes ... 3.1 seconds But it works! And it is 392K atoms :-) Miguel ----- Open Source Molecular Visualization www.jmol.org [EMAIL PROTECTED] ----- ------------------------------------------------------- SF email is sponsored by - The IT Product Guide Read honest & candid reviews on hundreds of IT Products from real users. Discover which products truly live up to the hype. Start reading now. http://productguide.itmanagersjournal.com/ _______________________________________________ Jmol-developers mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-developers
