Bugs item #957304, was opened at 2004-05-20 11:55 Message generated for change (Comment added) made by egonw You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=957304&group_id=23629
Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: File Input/Output Group: None >Status: Closed >Resolution: Wont Fix Priority: 5 Submitted By: Miguel (michaelthoward) Assigned to: Miguel (migueljmol) Summary: 2d cml files Initial Comment: Need to do something about 2D CML files: ---------------------------- Original Message ---------------------------- Subject: Re: [Cdk-user] Xindice, CML and Jmol problems From: "Miguel" <[EMAIL PROTECTED]> Date: Thu, May 20, 2004 11:53 To: "Ola Spjuth" <[EMAIL PROTECTED]> Cc: [email protected] -------------------------------------------------------------------------- > 5) When trying to view my CMLexported 2D-molecules in Jmol (tried latest 10beta9) I only get one big carbon. Manual changes in the .cml-file (changing x2 and y2 values on the atoms) doesn't help. If I add a z2 parameter and set the values different for the atoms I get a molecule (no bonds) that I at least can rotate in space. Any ideas why a change in the x2 and y2 parameters does not change the Jmol appearance? Is this because Jmol only supports cml up to v 1.0.1 and CDK outputs in cml v 2? Or am I simply missing a key point here? If I export in .mol format everything looks nice in Jmol so it must be a cml-problem. I can post the cml files if necessary. Jmol does not support 2D files. We probably should detect 2D files and put up an error message. Sorry for the trouble. Miguel ---------------------------------------------------------------------- >Comment By: Egon Willighagen (egonw) Date: 2006-03-05 19:25 Message: Logged In: YES user_id=25678 With Bioclipse around the corner, this bug report is no longer worth addressing in Jmol. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=957304&group_id=23629 ------------------------------------------------------- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnk&kid=110944&bid=241720&dat=121642 _______________________________________________ Jmol-developers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-developers
