[Jmol-developers] Re: Jmol-developers digest, Vol 1 #1180 - 12 msgs

[Charles(Qian) Xie]

Forgot to say that this error occurs in the standaline Jmol, not the applet. Save the HOMO file into a disk, open a console from the standalone app, and type in the isosurface command, and it throws the following erros: $ isosurface pos05 0.05 "examples/ethene-HOMO.cub.gz"; ScriptException:file not found : examples/ethene-HOMO.cub.gz:java.io.FileNotFoundException: examples\ethene-HOMO.cub.gz (The system cannot find the path specified)     Script line:isosurface pos05 0.05 "examples/ethene-HOMO.cub.gz"; ScriptException:file not found : examples/ethene-HOMO.cub.gz:java.io.FileNotFoundException: examples\ethene-HOMO.cub.gz (The system cannot find the path specified)     Script line:isosurface pos05 0.05 "examples/ethene-HOMO.cub.gz"; ScriptException:file not found : examples/ethene-HOMO.cub.gz:java.io.FileNotFoundException: examples\ethene-HOMO.cub.gz (The system cannot find the path specified)     Script line:isosurface pos05 0.05 "examples/ethene-HOMO.cub.gz"; $ Charles(Qian) Xie writes: This is from Examples: in new window using ethene-HOMO.cub.gz Works for me. Charles(Qian) Xie wrote: > Isosurface broken? > > http://www.stolaf.edu/people/hansonr/jmol/docs/#isosurface > > This example does not seem to work with v10.2. Error message: > >  $ isosurface pos05 0.05 "ethene-HOMO.cub.gz"; > ScriptException:file not found : > ethene-HOMO.cub.gz:java.io.FileNotFoundException: ethene-HOMO.cub.gz (The > system cannot find the file specified) >     Script line:isosurface pos05 0.05 "ethene-HOMO.cub.gz"; > ScriptException:file not found : Oddly enough, that's not what that page reads. It reads: load a different PDB file or one of my own molecules (reload) (text)          * isosurface pos05 0.05 "examples/ethene-HOMO.cub.gz";isosurface neg05 -0.05 "examples/ethene-HOMO.cub.gz";      * # now load some other surface further out;      * isosurface pos01 0.01 "examples/ethene-HOMO.cub.gz";isosurface neg01 -0.01 "examples/ethene-HOMO.cub.gz";color isosurface translucent; # make neg01 translucent So where is this one coming from?,.... copy and paste into the script console, save the HOMO.cub.gz file into a directory, load it and then run the scripts above.