Bugs item #1539636, was opened at 2006-08-13 14:34 Message generated for change (Tracker Item Submitted) made by Item Submitter You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1539636&group_id=23629
Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Scripting Group: None Status: Open Resolution: None Priority: 5 Submitted By: Eric Martz (emartz) Assigned to: Miguel (migueljmol) Summary: "show pdbheader" stops prematurely Initial Comment: There appears to be a bug in "show pdbheader" (Jmol applet 10.2.0). In my tests, it shows from the start of the PDB file to the last REMARK line. In fact, the header continues beyond what is being shown, ending with the last line preceding a line beginning with any one of three record types: ATOM HETATM MODEL Presently I am using "show pdbheader" via messageCallback to obtain the results of a ConSurf run, which are inserted in the pdb file header in lines beginning "!". Such lines are ignored by other programs that use PDB files, to the best of my knowledge. Since the ConSurf lines are inserted at the beginning of the header, this works OK. Later, however, I envision using the SEQRES lines to generate an interactive sequence display in FirstGlance in Jmol. Although SEQRES is part of the header, it is not currently being messaged by "show pdbheader" due to the bug. Therefore I would appreciate this bug being fixed. Thanks, -Eric Martz ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1539636&group_id=23629 ------------------------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ Jmol-developers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-developers
