Feature Requests item #1214557, was opened at 2005-06-04 00:27 Message generated for change (Settings changed) made by egonw You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379136&aid=1214557&group_id=23629
Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None >Status: Closed Priority: 5 Submitted By: ryhl (ryhl) Assigned to: Nobody/Anonymous (nobody) Summary: Displaying molecules & reactions in 2D Initial Comment: Hello Jmol developers, Thank you very much for your job! I think it would be very useful if Jmol could show molecules and reactions (including labels for molecules, reactions arrows, labels for radicals and so on) from *.mol and *.rxn files in 2D in the way they look in, say, ISIS/Draw. I tried to use Jmol applet for this purpuse, but I have the following problems: 1) Jmol writes Xx instead of radicals such as R1, Alk. 2) Jmol draws labels for atoms a little bit righter and upper than they should be in the molecule drawn in 2D like in a book. 3) Jmol draws labels for all atoms including carbon, although I would like to display all atomic symbols except carbon. 4) Jmol draws steric bonds like common single bonds. 5) Jmol does not display reaction arrows from *.rxn file. 6) Jmol does not display labels for molecules from *.rxn file. I think this feature is very important because this is the way we usually see molecules and reactions in books. Please write what do you think about this. P.S. Excuse me please for my English, it is not my native language. ---------------------------------------------------------------------- >Comment By: Egon Willighagen (egonw) Date: 2006-08-22 15:20 Message: Logged In: YES user_id=25678 Check out Bioclipse at http://www.bioclipse.net/. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379136&aid=1214557&group_id=23629 ------------------------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ Jmol-developers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-developers
